SMTL ID : 2qmp.1

Crystal Structure of HIV-1 protease complexed with PL-100

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x A00: N-[(5S)-5-{[(4-aminophenyl)sulfonyl](isobutyl)amino}-6-hydroxyhexyl]-Nalpha-(methoxycarbonyl)-beta-phenyl-L-phenylalaninamide(Non-covalent)

A00.1: 28 residues within 4Å: Chain A: L.23, D.25, G.27, A.28, D.29, K.45, M.46, I.47, G.48, G.49, I.50, P.81, V.82, I.84 Chain B: R.8, L.23, D.25, G.27, A.28, D.30, V.32, G.48, G.49, I.50, P.81, V.82, I.84 Ligands: A00.2 24 PLIP interactions: 11 interactions with chain A, 13 interactions with chain B Hydrophobic interactions: A:L.23, A:I.50, A:P.81, A:V.82, A:I.84, B:L.23, B:A.28, B:I.50, B:P.81, B:P.81, B:V.82, B:I.84 Hydrogen bonds: A:D.29, A:D.29, A:G.48, A:G.48, A:I.50, B:R.8, B:D.25, B:D.30, B:I.50 Salt bridges: A:D.25, B:D.25 Water bridges: B:D.30 A00.2: 27 residues within 4Å: Chain A: R.8, L.23, D.25, A.28, D.30, V.32, I.47, G.48, G.49, I.50, P.81, V.82, I.84 Chain B: L.23, D.25, G.27, A.28, D.29, M.46, I.47, G.48, G.49, I.50, P.81, V.82, I.84 Ligands: A00.1 25 PLIP interactions: 13 interactions with chain B, 12 interactions with chain A Hydrophobic interactions: B:L.23, B:I.50, B:P.81, B:V.82, B:I.84, A:L.23, A:A.28, A:I.50, A:P.81, A:V.82, A:V.82 Hydrogen bonds: B:D.29, B:D.29, B:G.48, B:I.50, A:R.8, A:D.25, A:D.30, A:I.50 Water bridges: B:D.30, B:D.30, B:G.48, A:D.30 Salt bridges: B:D.25, A:D.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Coburn, C.A. et al., Crystal Structure of HIV-1 protease complexed with PL-100. To be Published

Release Date

2008-07-22

Peptides

Pol polyprotein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Pol polyprotein

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