SMTL ID : 2qve.1

Crystal Structure of SgTAM bound to mechanism based inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

4 x 247: (3R)-3-amino-2,2-difluoro-3-(4-hydroxyphenyl)propanoic acid(Covalent)

247.1: 13 residues within 4Å: Chain A: Y.52, G.59, H.82, X.141, L.143, N.192, F.343, N.425, Q.429 Chain B: Q.292, Y.295, R.298 Chain C: Y.402 9 PLIP interactions: 1 interactions with chain C, 4 interactions with chain A, 4 interactions with chain B Hydrogen bonds: C:Y.402, A:N.192, A:N.192, A:N.328, B:Q.292, B:Y.295 Hydrophobic interactions: A:L.143 Salt bridges: B:R.298 Halogen bonds: B:Y.295 247.2: 15 residues within 4Å: Chain A: Q.292, Y.295, R.298 Chain B: Y.52, Y.58, G.59, H.82, X.141, L.143, N.192, N.328, F.343, N.425, Q.429 Chain D: Y.402 10 PLIP interactions: 2 interactions with chain D, 6 interactions with chain B, 2 interactions with chain A Hydrogen bonds: D:Y.402, D:Y.402, B:N.192, B:N.192, B:N.328 Hydrophobic interactions: B:Y.58, B:L.143 Water bridges: B:N.425 Salt bridges: A:R.298 Halogen bonds: A:Y.295 247.3: 13 residues within 4Å: Chain A: Y.402 Chain C: Y.52, G.59, H.82, X.141, L.143, N.192, F.343, N.425, Q.429 Chain D: Q.292, Y.295, R.298 9 PLIP interactions: 1 interactions with chain A, 4 interactions with chain D, 4 interactions with chain C Hydrogen bonds: A:Y.402, D:Q.292, D:Y.295, C:N.192, C:N.192, C:N.328 Salt bridges: D:R.298 Halogen bonds: D:Y.295 Hydrophobic interactions: C:L.143 247.4: 15 residues within 4Å: Chain B: Y.402 Chain C: Q.292, Y.295, R.298 Chain D: Y.52, Y.58, G.59, H.82, X.141, L.143, N.192, N.328, F.343, N.425, Q.429 10 PLIP interactions: 6 interactions with chain D, 2 interactions with chain C, 2 interactions with chain B Hydrophobic interactions: D:Y.58, D:L.143 Hydrogen bonds: D:N.192, D:N.192, D:N.328, B:Y.402, B:Y.402 Water bridges: D:N.425 Salt bridges: C:R.298 Halogen bonds: C:Y.295

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Montavon, T.J. et al., Design and characterization of mechanism-based inhibitors for the tyrosine aminomutase SgTAM. Bioorg.Med.Chem.Lett. (2008)

Release Date

2008-07-22

Peptides

Tyrosine Aminomutase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Tyrosine Aminomutase