SMTL ID : 2qvw.1 (3 other biounits)

Structure of Giardia Dicer refined against twinned data

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

12 x MN: MANGANESE (II) ION(Non-covalent)(Non-functional Binders)

MN.1: 3 residues within 4Å: Chain A: E.651, D.722, E.725 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.651, A:D.722, A:E.725 MN.2: 3 residues within 4Å: Chain A: E.338, D.406, E.409 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.409 MN.3: 3 residues within 4Å: Chain A: D.655, E.686, E.725 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.655, A:E.686 MN.4: 1 residues within 4Å: Chain A: E.675 No protein-ligand interaction detected (PLIP) MN.5: 1 residues within 4Å: Chain A: H.94 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.94 MN.6: 1 residues within 4Å: Chain A: H.515 No protein-ligand interaction detected (PLIP) MN.7: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MN.8: 2 residues within 4Å: Chain A: R.336, H.667 No protein-ligand interaction detected (PLIP) MN.9: 4 residues within 4Å: Chain A: H.670, P.671, T.672, L.673 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.670 MN.10: 1 residues within 4Å: Chain A: H.710 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.710 MN.11: 4 residues within 4Å: Chain A: F.357, P.358, D.359, A.360 No protein-ligand interaction detected (PLIP) MN.12: 3 residues within 4Å: Chain A: R.374, N.375, E.376 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.376

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Macrae, I.J. et al., An unusual case of pseudo-merohedral twinning in orthorhombic crystals of Dicer. Acta Crystallogr.,Sect.D (2007)

Release Date

2007-09-25

Peptides

GLP_546_48378_50642: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

GLP_546_48378_50642

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