SMTL ID : 2r38.1

I84V HIV-1 protease mutant in complex with a carbamoyl decorated pyrrolidine-based inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.81 Å

Oligo State

homo-dimer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.2: 3 residues within 4Å: Chain B: G.73, T.74, N.88 Ligand excluded by PLIP

1 x G4G: 4,4'-{(3S,4S)-PYRROLIDINE-3,4-DIYLBIS[(BENZYLIMINO)SULFONYL]}DIBENZAMIDE(Non-covalent)

G4G.3: 26 residues within 4Å: Chain A: L.23, D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, V.82, V.84 Chain B: R.8, L.23, D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, P.81 30 PLIP interactions: 17 interactions with chain A, 13 interactions with chain B Hydrophobic interactions: A:L.23, A:A.28, A:V.32, A:I.50, A:V.82, B:L.23, B:A.28, B:V.32, B:P.81 Hydrogen bonds: A:D.25, A:D.29, A:D.30, A:I.50, B:D.29, B:D.30, B:D.30, B:D.30, B:I.50 Water bridges: A:R.8, A:D.29, A:D.29, A:K.45, A:K.45, A:G.48, A:G.48, B:R.8, B:G.48, B:G.48 Salt bridges: A:D.25, B:D.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bottcher, J. et al., Structural and Kinetic Analysis of Pyrrolidine-Based Inhibitors of the Drug-Resistant Ile84Val Mutant of HIV-1 Protease. J.Mol.Biol. (2008)

Release Date

2008-09-02

Peptides

Protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protease

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