SMTL ID : 2r5r.1

The crystal structure of DUF198 from Nitrosomonas europaea ATCC 19718

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.05 Å

Oligo State

homo-tetramer

Ligands

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 7 residues within 4Å: Chain A: F.224, E.226, D.227, R.230 Chain C: F.64, K.65, G.66 4 PLIP interactions: 1 interactions with chain C, 3 interactions with chain A Hydrogen bonds: C:G.66, A:D.227, A:D.227 Salt bridges: A:R.230 PO4.3: 7 residues within 4Å: Chain B: F.224, E.226, D.227, R.230 Chain D: F.64, K.65, G.66 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain D Hydrogen bonds: B:D.227, B:D.227, D:G.66 Salt bridges: B:R.230 PO4.5: 7 residues within 4Å: Chain A: F.64, K.65, G.66 Chain C: F.224, E.226, D.227, R.230 5 PLIP interactions: 4 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:E.226, C:D.227, C:D.227, A:G.66 Salt bridges: C:R.230 PO4.7: 7 residues within 4Å: Chain B: F.64, K.65, G.66 Chain D: F.224, E.226, D.227, R.230 5 PLIP interactions: 4 interactions with chain D, 1 interactions with chain B Hydrogen bonds: D:E.226, D:D.227, D:D.227, B:G.66 Salt bridges: D:R.230

4 x IMD: IMIDAZOLE(Non-covalent)

IMD.2: 5 residues within 4Å: Chain A: A.41, F.184, I.185, W.186, I.187 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.187 IMD.4: 5 residues within 4Å: Chain B: A.41, F.184, I.185, W.186, I.187 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:I.187 IMD.6: 5 residues within 4Å: Chain C: A.41, F.184, I.185, W.186, I.187 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:I.187 IMD.8: 5 residues within 4Å: Chain D: A.41, F.184, I.185, W.186, I.187 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:I.187

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The crystal structure of DUF198 from Nitrosomonas europaea ATCC 19718. To be Published

Release Date

2007-09-18

Peptides

UPF0343 protein NE1163: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

UPF0343 protein NE1163