SMTL ID : 2r6f.1

Crystal Structure of Bacillus stearothermophilus UvrA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-dimer

Ligands

4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 15 residues within 4Å: Chain A: H.32, N.33, L.52, S.53, G.54, S.55, G.56, K.57, S.58, S.59, G.583, Y.836, M.837, Q.841, T.845 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:G.54, A:S.55, A:G.56, A:K.57, A:S.58, A:S.58, A:S.59, A:S.59, A:Q.841 Water bridges: A:S.58, A:S.58 Salt bridges: A:K.57 pi-Stacking: A:H.32 ADP.2: 15 residues within 4Å: Chain A: Y.495, L.496, R.500, T.504, H.638, N.639, V.658, S.659, G.660, S.661, G.662, K.663, S.664, T.665, G.925 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:Y.495, A:R.500, A:G.660, A:S.661, A:G.662, A:K.663, A:S.664, A:S.664, A:S.664, A:T.665, A:T.665 Salt bridges: A:K.663 pi-Stacking: A:H.638, A:H.638 ADP.6: 12 residues within 4Å: Chain B: H.32, L.52, G.54, S.55, G.56, K.57, S.58, S.59, G.583, Y.836, Q.841, T.845 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:G.54, B:S.55, B:G.56, B:K.57, B:S.58, B:S.58, B:S.59, B:S.59, B:Y.836, B:Q.841 Salt bridges: B:K.57 pi-Stacking: B:H.32, B:H.32 ADP.7: 14 residues within 4Å: Chain B: Y.495, L.496, R.500, H.638, N.639, V.658, S.659, G.660, S.661, G.662, K.663, S.664, T.665, G.925 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:Y.495, B:R.500, B:N.639, B:G.660, B:G.660, B:S.661, B:G.662, B:K.663, B:S.664, B:S.664, B:S.664, B:T.665, B:T.665 Salt bridges: B:K.663 pi-Stacking: B:H.638, B:H.638

6 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: C.140, H.143, C.270, C.273 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.140, A:H.143, A:C.270, A:C.273 ZN.4: 4 residues within 4Å: Chain A: C.294, C.297, C.424, C.427 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.294, A:C.297, A:C.424, A:C.427 ZN.5: 4 residues within 4Å: Chain A: C.756, C.759, C.779, C.782 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.756, A:C.759, A:C.779, A:C.782 ZN.8: 4 residues within 4Å: Chain B: C.140, H.143, C.270, C.273 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.140, B:H.143, B:C.270, B:C.273 ZN.9: 4 residues within 4Å: Chain B: C.294, C.297, C.424, C.427 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.294, B:C.297, B:C.424, B:C.427 ZN.10: 4 residues within 4Å: Chain B: C.756, C.759, C.779, C.782 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.756, B:C.759, B:C.779, B:C.782

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pakotiprapha, D. et al., Crystal Structure of Bacillus stearothermophilus UvrA Provides Insight into ATP-Modulated Dimerization, UvrB Interaction, and DNA Binding. Mol.Cell (2008)

Release Date

2008-01-08

Peptides

Excinuclease ABC subunit A: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Excinuclease ABC subunit A

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