SMTL ID : 2rgh.1

Structure of Alpha-Glycerophosphate Oxidase from Streptococcus sp.: A Template for the Mitochondrial Alpha-Glycerophosphate Dehydrogenase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: W.249, K.252, D.320, F.321, T.322 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.321, A:T.322 Salt bridges: A:K.252 SO4.3: 5 residues within 4Å: Chain B: W.249, K.252, D.320, F.321, T.322 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:F.321, B:T.322 Salt bridges: B:K.252

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.2: 37 residues within 4Å: Chain A: I.38, G.39, G.40, G.41, I.42, T.43, I.61, E.62, M.63, Q.64, G.69, T.70, S.71, R.73, S.74, T.75, L.77, H.79, M.209, K.210, A.211, T.245, S.246, G.247, P.248, W.249, G.271, H.273, T.312, G.358, L.359, R.360, P.361, G.392, K.393, I.394, T.395 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:R.360 Hydrogen bonds: A:G.40, A:T.43, A:T.43, A:T.43, A:Q.64, A:G.69, A:T.70, A:T.70, A:S.71, A:S.71, A:T.75, A:L.77, A:L.77, A:A.211, A:A.211, A:G.247, A:G.392, A:K.393, A:I.394, A:T.395 Water bridges: A:G.41, A:G.44, A:K.76 pi-Stacking: A:W.249 FAD.4: 37 residues within 4Å: Chain B: I.38, G.39, G.40, G.41, I.42, T.43, I.61, E.62, M.63, Q.64, G.69, T.70, S.71, R.73, S.74, T.75, L.77, H.79, M.209, K.210, A.211, T.245, S.246, G.247, P.248, W.249, G.271, H.273, T.312, G.358, L.359, R.360, P.361, G.392, K.393, I.394, T.395 25 PLIP interactions: 25 interactions with chain B Hydrophobic interactions: B:R.360 Hydrogen bonds: B:G.40, B:T.43, B:T.43, B:T.43, B:Q.64, B:G.69, B:T.70, B:T.70, B:S.71, B:S.71, B:T.75, B:L.77, B:L.77, B:A.211, B:A.211, B:G.247, B:G.392, B:K.393, B:I.394, B:T.395 Water bridges: B:G.41, B:G.44, B:K.76 pi-Stacking: B:W.249

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Colussi, T. et al., Structure of alpha-glycerophosphate oxidase from Streptococcus sp.: a template for the mitochondrial alpha-glycerophosphate dehydrogenase. Biochemistry (2008)

Release Date

2008-01-15

Peptides

Alpha-Glycerophosphate Oxidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Alpha-Glycerophosphate Oxidase