SMTL ID : 2rgo.1 (2 other biounits)

Structure of Alpha-Glycerophosphate Oxidase from Streptococcus sp.: A Template for the Mitochondrial Alpha-Glycerophosphate Dehydrogenase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 36 residues within 4Å: Chain A: I.24, G.25, G.27, I.28, T.29, I.47, E.48, M.49, Q.50, G.55, T.56, S.57, R.59, S.60, T.61, M.195, K.196, A.197, T.231, S.232, G.233, P.234, W.235, V.239, G.257, T.298, G.344, L.345, R.346, P.347, Y.357, N.358, G.428, K.429, I.430, T.431 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:R.346 Hydrogen bonds: A:G.26, A:I.28, A:T.29, A:T.29, A:T.29, A:M.49, A:Q.50, A:G.55, A:T.56, A:S.57, A:S.60, A:T.61, A:A.197, A:A.197, A:N.358, A:G.428, A:I.430, A:T.431 Water bridges: A:G.27, A:G.27, A:T.61, A:G.233 pi-Stacking: A:W.235, A:Y.357 FAD.2: 33 residues within 4Å: Chain B: G.25, G.26, G.27, I.28, T.29, I.47, E.48, M.49, Q.50, G.55, T.56, S.57, S.60, T.61, M.195, K.196, A.197, T.231, S.232, G.233, P.234, W.235, V.239, G.257, G.344, L.345, R.346, P.347, Y.357, G.428, K.429, I.430, T.431 26 PLIP interactions: 26 interactions with chain B Hydrophobic interactions: B:T.61, B:R.346 Hydrogen bonds: B:I.28, B:T.29, B:T.29, B:T.29, B:M.49, B:Q.50, B:T.56, B:T.56, B:S.57, B:S.57, B:S.60, B:S.60, B:T.61, B:T.61, B:A.197, B:A.197, B:N.358, B:G.428, B:I.430, B:T.431 Water bridges: B:G.27, B:G.30, B:G.55, B:G.233

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Colussi, T. et al., Structure of alpha-glycerophosphate oxidase from Streptococcus sp.: a template for the mitochondrial alpha-glycerophosphate dehydrogenase. Biochemistry (2008)

Release Date

2008-01-15

Peptides

Alpha-Glycerophosphate Oxidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Alpha-Glycerophosphate Oxidase

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