SMTL ID : 2ri7.1

Crystal structure of PHD finger-linker-bromodomain Y17E mutant from human BPTF in the H3(1-9)K4ME2 bound state

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x ALA- ARG- THR- MLY- GLN- THR: histone H3.1(Non-covalent)

ALA-ARG-THR-MLY-GLN-THR.1: 17 residues within 4Å: Chain A: Y.10, E.17, E.19, S.20, K.21, F.22, Y.23, I.24, G.25, C.26, D.27, Q.30, W.32, Q.42, A.45, I.48, D.49 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:F.22, A:W.32 Hydrogen bonds: A:Y.23, A:Y.23, A:G.25, A:C.26, A:Q.30, A:Q.42, A:I.48 Water bridges: A:C.26, A:C.26, A:D.27, A:D.27, A:Q.30, A:Q.30, A:D.49 Salt bridges: A:E.17, A:D.27 pi-Cation interactions: A:W.32

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.11, C.13, H.34, C.37 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.11, A:C.13, A:H.34, A:C.37 ZN.3: 4 residues within 4Å: Chain A: C.26, C.29, C.53, C.56 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.26, A:C.29, A:C.53, A:C.56

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 2 residues within 4Å: Chain A: E.159, V.160 5 PLIP interactions: 5 interactions with chain A Water bridges: A:E.159, A:E.159, A:E.159, A:S.163, A:S.163

1 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.5: 3 residues within 4Å: Chain A: P.92, C.144, N.148 1 PLIP interactions: 1 interactions with chain A Water bridges: A:C.144

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, H. et al., Structural Basis for Lower Lysine Methylation State-Specific Readout by MBT Repeats of L3MBTL1 and an Engineered PHD Finger. Mol.Cell (2007)

Release Date

2007-12-11

Peptides

Nucleosome-remodeling factor subunit BPTF: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nucleosome-remodeling factor subunit BPTF