SMTL ID : 2rkf.1

HIV-1 PR resistant mutant + LPV

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: Q.7, R.8 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.8 Salt bridges: A:R.8 SO4.4: 2 residues within 4Å: Chain B: Q.7, R.8 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Q.7, B:R.8 Salt bridges: B:R.8 Water bridges: A:R.87

1 x AB1: N-{1-BENZYL-4-[2-(2,6-DIMETHYL-PHENOXY)-ACETYLAMINO]-3-HYDROXY-5-PHENYL-PENTYL}-3-METHYL-2-(2-OXO-TETRAHYDRO-PYRIMIDIN-1-YL)-BUTYRAMIDE(Non-covalent)

AB1.2: 22 residues within 4Å: Chain A: D.25, G.27, A.28, D.29, D.30, I.32, G.49, I.50, P.81, I.84 Chain B: L.23, D.25, G.27, A.28, D.29, D.30, I.32, G.48, G.49, I.50, A.82, I.84 17 PLIP interactions: 9 interactions with chain A, 8 interactions with chain B Hydrophobic interactions: A:A.28, A:D.29, A:D.30, A:I.32, A:P.81, A:I.84, B:L.23, B:I.32, B:A.82, B:I.84 Hydrogen bonds: A:D.25, A:G.27, B:G.27, B:D.29, B:D.29 Water bridges: A:I.50, B:I.50

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: D.29, R.87, N.88 Chain B: W.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.29, A:R.87, A:R.87 GOL.5: 4 residues within 4Å: Chain A: W.6 Chain B: D.29, R.87, N.88 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.87, B:R.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kozisek, M. et al., Ninety-nine is not enough: molecular characterization of inhibitor-resistant human immunodeficiency virus type 1 protease mutants with insertions in the flap region. J.Virol. (2008)

Release Date

2008-08-05

Peptides

PROTEASE RETROPEPSIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PROTEASE RETROPEPSIN

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