SMTL ID : 2rl7.2 (1 other biounit)

Crystal Structure cation-dependent mannose 6-phosphate receptor at pH 4.8

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-NAG.1: 3 residues within 4Å: Chain A: R.79, N.81, E.82 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 4 residues within 4Å: Chain B: S.60, R.79, N.81, E.82 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.60, B:S.60

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 3 residues within 4Å: Chain A: R.121, T.123, S.150 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.150, A:S.150 ACT.4: 1 residues within 4Å: Chain A: N.71 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:N.71 Water bridges: A:N.71 ACT.6: 2 residues within 4Å: Chain B: E.17, A.21 2 PLIP interactions: 2 interactions with chain B Water bridges: B:E.17, B:A.21

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 2 residues within 4Å: Chain A: Q.40, S.41 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.40 Water bridges: A:S.41

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Olson, L.J. et al., Structural Insights into the Mechanism of pH-dependent Ligand Binding and Release by the Cation-dependent Mannose 6-Phosphate Receptor. J.Biol.Chem. (2008)

Release Date

2008-02-12

Peptides

Cation-dependent mannose-6-phosphate receptor: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Cation-dependent mannose-6-phosphate receptor

Related Entries With Identical Sequence