SMTL ID : 2ush.2 (1 other biounit)

5'-NUCLEOTIDASE FROM E. COLI

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.22 Å

Oligo State

monomer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: D.41, H.43, D.84, Q.254 Ligands: ZN.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.41, A:H.43, A:D.84, H2O.2 ZN.2: 6 residues within 4Å: Chain A: D.41, D.84, N.116, H.217, H.252 Ligands: ZN.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.84, A:H.217, A:H.252, H2O.2 ZN.5: 2 residues within 4Å: Chain A: H.226, E.235 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.226, A:E.235, A:E.235 ZN.6: 1 residues within 4Å: Chain A: E.225 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.225, A:E.225

2 x WO4: TUNGSTATE(VI)ION(Non-covalent)

WO4.3: 2 residues within 4Å: Chain A: K.322 Ligands: WO4.4 No protein-ligand interaction detected (PLIP) WO4.4: 3 residues within 4Å: Chain A: R.379, R.410 Ligands: WO4.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.379, A:R.410, A:R.410

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Knofel, T. et al., X-ray structure of the Escherichia coli periplasmic 5'-nucleotidase containing a dimetal catalytic site. Nat.Struct.Biol. (1999)

Release Date

1999-06-15

Peptides

5'-NUCLEOTIDASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

5'-NUCLEOTIDASE

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