SMTL ID : 2uyg.1

Crystallogaphic structure of the typeII 3-Dehydroquinase from Thermus Thermophilus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-12-mer

Ligands

12 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 11 residues within 4Å: Chain A: L.10, R.16, Y.21, N.73, G.75, H.79, H.99, L.100, T.101, L.103, R.110 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:R.16, A:R.16, A:Y.21, A:N.73, A:H.79, A:L.100, A:T.101, A:R.110 GOL.2: 10 residues within 4Å: Chain B: R.16, Y.21, N.73, G.75, H.79, H.99, L.100, T.101, L.103, R.110 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:R.16, B:R.16, B:Y.21, B:N.73, B:H.79, B:H.99, B:L.100, B:T.101, B:R.110 GOL.3: 11 residues within 4Å: Chain C: L.10, R.16, Y.21, N.73, G.75, H.79, H.99, L.100, T.101, L.103, R.110 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:R.16, C:R.16, C:Y.21, C:Y.21, C:N.73, C:H.79, C:L.100, C:T.101, C:R.110 GOL.4: 9 residues within 4Å: Chain D: R.16, Y.21, N.73, G.75, H.79, H.99, L.100, T.101, L.103 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:R.16, D:R.16, D:R.16, D:Y.21, D:H.79, D:H.99, D:L.100, D:T.101 GOL.5: 9 residues within 4Å: Chain E: L.10, R.16, Y.21, N.73, G.75, H.99, L.100, T.101, L.103 7 PLIP interactions: 7 interactions with chain E Hydrogen bonds: E:R.16, E:R.16, E:Y.21, E:N.73, E:G.75, E:L.100, E:T.101 GOL.6: 10 residues within 4Å: Chain F: L.10, R.16, Y.21, N.73, G.75, H.79, H.99, L.100, L.103, R.110 6 PLIP interactions: 6 interactions with chain F Hydrogen bonds: F:R.16, F:Y.21, F:H.79, F:H.99, F:L.100, F:R.110 GOL.7: 8 residues within 4Å: Chain G: L.10, R.16, Y.21, N.73, H.99, L.100, T.101, L.103 5 PLIP interactions: 5 interactions with chain G Hydrogen bonds: G:R.16, G:Y.21, G:N.73, G:L.100, G:T.101 GOL.8: 9 residues within 4Å: Chain H: L.10, R.16, Y.21, N.73, G.75, H.99, L.100, T.101, L.103 9 PLIP interactions: 9 interactions with chain H Hydrogen bonds: H:R.16, H:R.16, H:Y.21, H:Y.21, H:N.73, H:H.79, H:H.99, H:L.100, H:T.101 GOL.9: 9 residues within 4Å: Chain I: L.10, R.16, Y.21, N.73, H.79, H.99, L.100, L.103, R.110 8 PLIP interactions: 8 interactions with chain I Hydrogen bonds: I:R.16, I:R.16, I:N.73, I:N.73, I:H.79, I:L.100, I:T.101, I:R.110 GOL.10: 9 residues within 4Å: Chain J: R.16, Y.21, N.73, G.75, H.79, H.99, L.100, L.103, R.110 7 PLIP interactions: 7 interactions with chain J Hydrogen bonds: J:R.16, J:Y.21, J:N.73, J:H.79, J:H.99, J:L.100, J:R.110 GOL.11: 11 residues within 4Å: Chain K: R.16, Y.21, N.73, G.75, H.79, H.99, L.100, T.101, L.103, R.106, R.110 9 PLIP interactions: 9 interactions with chain K Hydrogen bonds: K:R.16, K:R.16, K:Y.21, K:Y.21, K:N.73, K:H.79, K:L.100, K:T.101, K:R.110 GOL.12: 10 residues within 4Å: Chain L: L.10, R.16, Y.21, N.73, G.75, H.79, H.99, L.100, L.103, R.110 9 PLIP interactions: 9 interactions with chain L Hydrogen bonds: L:R.16, L:R.16, L:Y.21, L:N.73, L:H.79, L:H.79, L:H.99, L:L.100, L:R.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Utsunomiya, H. et al., Crystallogaphic Structure of the Typeii 3-Dehydroquinase from Thermus Thermophilus. To be Published

Release Date

2008-05-27

Peptides

3-DEHYDROQUINATE DEHYDRATASE: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

3-DEHYDROQUINATE DEHYDRATASE