SMTL ID : 2uym.1 (1 other biounit)

Crystal structure of KSP in complex with ADP and thiophene containing inhibitor 37

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 13 residues within 4Å: Chain A: R.24, R.26, P.27, Q.106, T.107, G.108, T.109, G.110, K.111, T.112, F.113, E.118 Ligands: MG.2 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:R.24, A:G.108, A:T.109, A:G.110, A:K.111, A:T.112, A:F.113, A:E.118 Water bridges: A:R.24, A:R.24, A:R.26, A:N.29, A:K.111, A:K.111 Salt bridges: A:K.111 pi-Stacking: A:F.113, A:F.113

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: T.112 Ligands: ADP.1 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.112, H2O.5, H2O.6, H2O.8, H2O.8

1 x K03: N,N-DIETHYL-5,5-DIMETHYL-2-[(2-THIENYLCARBONYL)AMINO]-4,5,6,7-TETRAHYDRO-1-BENZOTHIOPHENE-3-CARBOXAMIDE(Non-covalent)

K03.3: 16 residues within 4Å: Chain A: E.116, E.118, R.119, W.127, D.130, A.133, I.136, P.137, L.160, Y.211, L.214, E.215, G.217, A.218, R.221, F.239 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:E.116, A:R.119, A:A.133, A:I.136, A:L.214, A:L.214, A:E.215, A:R.221, A:F.239, A:F.239

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pinkerton, A.B. et al., Synthesis and Sar of Thiophene Containing Kinesin Spindle Protein (Ksp) Inhibitors. Bioorg.Med.Chem.Lett. (2007)

Release Date

2007-05-22

Peptides

KINESIN-LIKE PROTEIN KIF11: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

KINESIN-LIKE PROTEIN KIF11

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