SMTL ID : 2v8i.1

STRUCTURE OF A FAMILY 2 PECTATE LYASE IN A NATIVE FORM

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

51 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 2 residues within 4Å: Chain A: H.440, S.493 Ligand excluded by PLIP IOD.2: 5 residues within 4Å: Chain A: M.517, R.523, Q.541, P.542 Ligands: IOD.51 Ligand excluded by PLIP IOD.3: 3 residues within 4Å: Chain A: H.106, S.120 Ligands: IOD.6 Ligand excluded by PLIP IOD.4: 2 residues within 4Å: Chain A: R.523, Q.541 Ligand excluded by PLIP IOD.5: 2 residues within 4Å: Chain A: S.427, R.462 Ligand excluded by PLIP IOD.6: 5 residues within 4Å: Chain A: G.513, A.514, S.525 Ligands: IOD.3, IOD.30 Ligand excluded by PLIP IOD.7: 1 residues within 4Å: Chain A: K.365 Ligand excluded by PLIP IOD.8: 2 residues within 4Å: Chain A: K.539, L.540 Ligand excluded by PLIP IOD.9: 3 residues within 4Å: Chain A: S.167, G.195, L.196 Ligand excluded by PLIP IOD.10: 1 residues within 4Å: Chain A: R.448 Ligand excluded by PLIP IOD.11: 1 residues within 4Å: Chain A: R.399 Ligand excluded by PLIP IOD.12: 3 residues within 4Å: Chain A: G.406, T.424, T.425 Ligand excluded by PLIP IOD.13: 2 residues within 4Å: Chain A: A.192, K.252 Ligand excluded by PLIP IOD.14: 2 residues within 4Å: Chain A: A.178, W.180 Ligand excluded by PLIP IOD.15: 2 residues within 4Å: Chain A: D.1, I.459 Ligand excluded by PLIP IOD.16: 2 residues within 4Å: Chain A: A.178, E.181 Ligand excluded by PLIP IOD.17: 2 residues within 4Å: Chain A: Q.306, K.309 Ligand excluded by PLIP IOD.18: 1 residues within 4Å: Chain A: E.171 Ligand excluded by PLIP IOD.19: 4 residues within 4Å: Chain A: D.85, R.88 Ligands: IOD.27, IOD.45 Ligand excluded by PLIP IOD.20: 3 residues within 4Å: Chain A: E.538, K.539, Q.541 Ligand excluded by PLIP IOD.21: 3 residues within 4Å: Chain A: R.527, N.529 Ligands: IOD.26 Ligand excluded by PLIP IOD.22: 5 residues within 4Å: Chain A: P.313, Q.314, G.315, Q.316, D.317 Ligand excluded by PLIP IOD.23: 1 residues within 4Å: Chain A: R.82 Ligand excluded by PLIP IOD.24: 2 residues within 4Å: Chain A: R.88, V.141 Ligand excluded by PLIP IOD.25: 3 residues within 4Å: Chain A: K.290, P.343 Ligands: IOD.47 Ligand excluded by PLIP IOD.26: 4 residues within 4Å: Chain A: R.527, N.529, E.530 Ligands: IOD.21 Ligand excluded by PLIP IOD.27: 2 residues within 4Å: Chain A: P.28 Ligands: IOD.19 Ligand excluded by PLIP IOD.28: 2 residues within 4Å: Chain A: Y.386, A.441 Ligand excluded by PLIP IOD.29: 4 residues within 4Å: Chain A: T.355, L.356, K.365 Ligands: IOD.32 Ligand excluded by PLIP IOD.30: 2 residues within 4Å: Chain A: E.121 Ligands: IOD.6 Ligand excluded by PLIP IOD.31: 2 residues within 4Å: Chain A: D.359, K.364 Ligand excluded by PLIP IOD.32: 2 residues within 4Å: Chain A: G.366 Ligands: IOD.29 Ligand excluded by PLIP IOD.33: 1 residues within 4Å: Chain A: H.215 Ligand excluded by PLIP IOD.34: 2 residues within 4Å: Chain A: H.263, K.265 Ligand excluded by PLIP IOD.35: 2 residues within 4Å: Chain A: R.51, K.112 Ligand excluded by PLIP IOD.36: 1 residues within 4Å: Chain A: R.78 Ligand excluded by PLIP IOD.37: 2 residues within 4Å: Chain A: L.3, S.74 Ligand excluded by PLIP IOD.38: 3 residues within 4Å: Chain A: G.173, K.174, P.175 Ligand excluded by PLIP IOD.39: 2 residues within 4Å: Chain A: R.253, E.254 Ligand excluded by PLIP IOD.40: 3 residues within 4Å: Chain A: G.312, P.313, Q.316 Ligand excluded by PLIP IOD.41: 2 residues within 4Å: Chain A: N.353, P.371 Ligand excluded by PLIP IOD.42: 3 residues within 4Å: Chain A: K.497, Q.499, A.500 Ligand excluded by PLIP IOD.43: 3 residues within 4Å: Chain A: R.151, L.212, D.218 Ligand excluded by PLIP IOD.44: 1 residues within 4Å: Chain A: F.184 Ligand excluded by PLIP IOD.45: 1 residues within 4Å: Ligands: IOD.19 Ligand excluded by PLIP IOD.46: 1 residues within 4Å: Chain A: Y.207 Ligand excluded by PLIP IOD.47: 1 residues within 4Å: Ligands: IOD.25 Ligand excluded by PLIP IOD.48: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.49: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.50: 1 residues within 4Å: Chain A: I.388 Ligand excluded by PLIP IOD.51: 1 residues within 4Å: Ligands: IOD.2 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abbott, D.W. et al., A Family 2 Pectate Lyase Displays a Rare Fold and Transition Metal-Assisted -Elimination. J.Biol.Chem. (2007)

Release Date

2007-09-18

Peptides

PECTATE LYASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PECTATE LYASE

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