SMTL ID : 2ve6.4 (3 other biounits)

Crystal structure of a Murine MHC class I H2-Db molecule in complex with a photocleavable peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

hetero-1-1-mer

Ligands

1 x PHE- ALA- PRO- GLY- ASN- TYR- PRQ- ALA- LEU: SENDAI VIRUS EPITOPE RESIDUES 324-332 MODIFIED AT P7(Non-covalent)

PHE-ALA-PRO-GLY-ASN-TYR-PRQ-ALA-LEU.1: 25 residues within 4Å: Chain A: M.5, Y.7, Y.45, E.63, K.66, Q.70, W.73, V.76, S.77, N.80, Y.84, Q.97, S.99, F.116, Y.123, T.143, K.146, W.147, S.150, H.155, Y.156, Y.159, E.163, W.167, Y.171 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:Y.7, A:W.73, A:W.73, A:V.76, A:Y.123, A:W.147, A:Y.159, A:Y.159, A:E.163, A:E.163, A:W.167, A:W.167 Hydrogen bonds: A:E.63, A:Q.70, A:Q.70, A:S.77, A:Q.97, A:Q.97, A:T.143, A:K.146, A:Y.156, A:Y.159, A:Y.171 Salt bridges: A:K.146 pi-Cation interactions: A:K.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grotenbreg, G.M. et al., Discovery of Cd8+ T Cell Epitopes in Chlamydia Trachomatis Infection Through Use of Caged Class I Mhc Tetramers. Proc.Natl.Acad.Sci.USA (2008)

Release Date

2008-01-22

Peptides

H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN D-B ALPHA CHAIN: A
BETA-2-MICROGLOBULIN: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
J

B
K

H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN D-B ALPHA CHAIN

BETA-2-MICROGLOBULIN

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