SMTL ID : 2vh9.1 (1 other biounit)

CRYSTAL STRUCTURE OF NXG1-DELTAYNIIG IN COMPLEX WITH XLLG, A XYLOGLUCAN DERIVED OLIGOSACCHARIDE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

2 x BGC- XYS- GAL: beta-D-galactopyranose-(1-2)-alpha-D-xylopyranose-(1-6)-beta-D-glucopyranose

BGC-XYS-GAL.1: 7 residues within 4Å: Chain A: W.51, Y.105, S.202, W.204 Ligands: BGC-XYS-GAL.2, BGC-XYS-GAL.2, BGC.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.51, A:Y.105, A:S.202 Water bridges: A:W.51, A:Y.105, A:H.116, A:H.116, A:N.109, A:N.109 BGC-XYS-GAL.2: 9 residues within 4Å: Chain A: L.50, W.51, Y.105, N.109, Q.110 Ligands: BGC-XYS-GAL.1, BGC-XYS-GAL.1, BGC-XYS.3, BGC-XYS.3 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.205 Hydrogen bonds: A:L.50, A:N.109

1 x BGC- XYS: alpha-D-xylopyranose-(1-6)-beta-D-glucopyranose(Non-covalent)

BGC-XYS.3: 4 residues within 4Å: Chain A: W.51, T.70, S.71 Ligands: BGC-XYS-GAL.2 6 PLIP interactions: 6 interactions with chain A Water bridges: A:G.52, A:G.72, A:D.68, A:G.72, A:D.205, A:Y.220, A:Y.220 Hydrogen bonds: A:T.70

1 x ZN: ZINC ION(Non-covalent)

ZN.4: 2 residues within 4Å: Chain A: D.283, T.285 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.283, A:T.285

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 3 residues within 4Å: Chain A: R.57, W.66, P.224 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.57

1 x BGC: beta-D-glucopyranose(Non-covalent)

BGC.6: 9 residues within 4Å: Chain A: I.101, S.103, Y.105, E.118, D.120, E.122, W.204 Ligands: BGC-XYS-GAL.1, BGC-XYS-GAL.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.204 Water bridges: A:H.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mark, P. et al., Analysis of Nasturtium Tmnxg1 Complexes by Crystallography and Molecular Dynamics Provides Detailed Insight Into Substrate Recognition by Family Gh16 Xyloglucan Endo-Transglycosylases and Endo-Hydrolases. Proteins (2009)

Release Date

2008-11-25

Peptides

CELLULASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CELLULASE

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