SMTL ID : 2vhe.1 (1 other biounit)

PglD-CoA complex: An acetyl transferase from Campylobacter jejuni

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-trimer

Ligands

3 x COA: COENZYME A(Non-covalent)

COA.1: 16 residues within 4Å: Chain A: S.135, V.136, F.151, G.153, I.154, I.169, G.171, G.172, V.187, M.194 Chain C: A.141, L.159, P.160, V.177, V.189, P.190 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.151, A:I.169, A:V.187 Hydrogen bonds: A:I.154, A:G.172, A:G.172 Water bridges: A:G.188 COA.4: 16 residues within 4Å: Chain A: A.141, L.159, P.160, V.177, V.189, P.190 Chain B: S.135, V.136, F.151, G.153, I.154, I.169, G.171, G.172, V.187, M.194 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:F.151, B:I.169, B:V.187 Hydrogen bonds: B:I.154, B:G.172, B:G.172 Water bridges: B:G.188 COA.7: 16 residues within 4Å: Chain B: A.141, L.159, P.160, V.177, V.189, P.190 Chain C: S.135, V.136, F.151, G.153, I.154, I.169, G.171, G.172, V.187, M.194 7 PLIP interactions: 7 interactions with chain C Hydrophobic interactions: C:F.151, C:I.169, C:V.187 Hydrogen bonds: C:I.154, C:G.172, C:G.172 Water bridges: C:G.188

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: P.46, K.47 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.47 Water bridges: A:K.47 SO4.3: 4 residues within 4Å: Chain A: S.12, G.13, H.14 Chain C: H.124 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain C Hydrogen bonds: A:G.13, A:H.14 Water bridges: A:S.12, C:N.161, C:N.161 Salt bridges: C:H.124 SO4.5: 2 residues within 4Å: Chain B: P.46, K.47 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.47 Water bridges: B:K.47 SO4.6: 4 residues within 4Å: Chain A: H.124 Chain B: S.12, G.13, H.14 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:G.13, B:H.14 Water bridges: B:S.12, A:N.161, A:N.161 Salt bridges: A:H.124 SO4.8: 2 residues within 4Å: Chain C: P.46, K.47 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:K.47 Water bridges: C:K.47 SO4.9: 4 residues within 4Å: Chain B: H.124 Chain C: S.12, G.13, H.14 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain C Water bridges: B:N.161, B:N.161, C:S.12 Salt bridges: B:H.124 Hydrogen bonds: C:G.13, C:H.14

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rangarajan, E.S. et al., Structure and Active Site Residues of Pgld, an N-Acetyltransferase from the Bacillosamine Synthetic Pathway Required for N-Glycan Synthesis in Campylobacter Jejuni. Biochemistry (2008)

Release Date

2008-01-29

Peptides

ACETYLTRANSFERASE: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

ACETYLTRANSFERASE

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