SMTL ID : 2vkf.1

COMPLEXES OF DODECIN WITH FLAVIN AND FLAVIN-LIKE LIGANDS

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-12-mer

Ligands

24 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 1 residues within 4Å: Chain D: D.40 6 PLIP interactions: 1 interactions with chain D, 5 Ligand-Water interactions Metal complexes: D:D.40, H2O.3, H2O.3, H2O.13, H2O.13, H2O.13 MG.2: 1 residues within 4Å: Chain A: E.13 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.13, H2O.1, H2O.1, H2O.1 MG.7: 1 residues within 4Å: Chain J: D.40 6 PLIP interactions: 1 interactions with chain J, 5 Ligand-Water interactions Metal complexes: J:D.40, H2O.6, H2O.6, H2O.32, H2O.33, H2O.33 MG.8: 1 residues within 4Å: Chain B: E.13 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:E.13, H2O.5, H2O.5, H2O.5 MG.13: 1 residues within 4Å: Chain G: D.40 6 PLIP interactions: 1 interactions with chain G, 5 Ligand-Water interactions Metal complexes: G:D.40, H2O.9, H2O.9, H2O.23, H2O.23, H2O.23 MG.14: 1 residues within 4Å: Chain C: E.13 4 PLIP interactions: 1 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:E.13, H2O.8, H2O.8, H2O.8 MG.19: 1 residues within 4Å: Chain E: D.40 6 PLIP interactions: 1 interactions with chain E, 5 Ligand-Water interactions Metal complexes: E:D.40, H2O.12, H2O.12, H2O.16, H2O.16, H2O.17 MG.20: 1 residues within 4Å: Chain D: E.13 4 PLIP interactions: 1 interactions with chain D, 3 Ligand-Water interactions Metal complexes: D:E.13, H2O.11, H2O.11, H2O.11 MG.25: 1 residues within 4Å: Chain A: D.40 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:D.40, H2O.3, H2O.3, H2O.3, H2O.16, H2O.16 MG.26: 1 residues within 4Å: Chain E: E.13 4 PLIP interactions: 1 interactions with chain E, 3 Ligand-Water interactions Metal complexes: E:E.13, H2O.14, H2O.15, H2O.15 MG.31: 1 residues within 4Å: Chain L: D.40 6 PLIP interactions: 1 interactions with chain L, 5 Ligand-Water interactions Metal complexes: L:D.40, H2O.19, H2O.19, H2O.39, H2O.39, H2O.40 MG.32: 1 residues within 4Å: Chain F: E.13 4 PLIP interactions: 1 interactions with chain F, 3 Ligand-Water interactions Metal complexes: F:E.13, H2O.18, H2O.18, H2O.18 MG.37: 1 residues within 4Å: Chain K: D.40 6 PLIP interactions: 1 interactions with chain K, 5 Ligand-Water interactions Metal complexes: K:D.40, H2O.22, H2O.22, H2O.36, H2O.36, H2O.36 MG.38: 1 residues within 4Å: Chain G: E.13 4 PLIP interactions: 1 interactions with chain G, 3 Ligand-Water interactions Metal complexes: G:E.13, H2O.21, H2O.21, H2O.21 MG.43: 1 residues within 4Å: Chain B: D.40 6 PLIP interactions: 1 interactions with chain B, 5 Ligand-Water interactions Metal complexes: B:D.40, H2O.6, H2O.6, H2O.7, H2O.26, H2O.26 MG.44: 1 residues within 4Å: Chain H: E.13 4 PLIP interactions: 1 interactions with chain H, 3 Ligand-Water interactions Metal complexes: H:E.13, H2O.24, H2O.24, H2O.25 MG.49: 1 residues within 4Å: Chain F: D.40 6 PLIP interactions: 1 interactions with chain F, 5 Ligand-Water interactions Metal complexes: F:D.40, H2O.19, H2O.19, H2O.20, H2O.29, H2O.29 MG.50: 1 residues within 4Å: Chain I: E.13 4 PLIP interactions: 1 interactions with chain I, 3 Ligand-Water interactions Metal complexes: I:E.13, H2O.28, H2O.28, H2O.28 MG.55: 1 residues within 4Å: Chain H: D.40 6 PLIP interactions: 1 interactions with chain H, 5 Ligand-Water interactions Metal complexes: H:D.40, H2O.26, H2O.26, H2O.27, H2O.32, H2O.32 MG.56: 1 residues within 4Å: Chain J: E.13 4 PLIP interactions: 1 interactions with chain J, 3 Ligand-Water interactions Metal complexes: J:E.13, H2O.31, H2O.31, H2O.31 MG.61: 1 residues within 4Å: Chain C: D.40 6 PLIP interactions: 1 interactions with chain C, 5 Ligand-Water interactions Metal complexes: C:D.40, H2O.9, H2O.9, H2O.10, H2O.36, H2O.36 MG.62: 1 residues within 4Å: Chain K: E.13 4 PLIP interactions: 1 interactions with chain K, 3 Ligand-Water interactions Metal complexes: K:E.13, H2O.34, H2O.34, H2O.34 MG.67: 1 residues within 4Å: Chain I: D.40 6 PLIP interactions: 1 interactions with chain I, 5 Ligand-Water interactions Metal complexes: I:D.40, H2O.29, H2O.29, H2O.30, H2O.39, H2O.39 MG.68: 1 residues within 4Å: Chain L: E.13 4 PLIP interactions: 1 interactions with chain L, 3 Ligand-Water interactions Metal complexes: L:E.13, H2O.38, H2O.38, H2O.38

12 x NA: SODIUM ION(Non-functional Binders)

NA.3: 5 residues within 4Å: Ligands: CL.4, NA.21, CL.22, NA.27, CL.28 11 PLIP interactions: 5 interactions with chain D, 2 interactions with chain E, 4 interactions with chain A Water bridges: D:K.4, D:K.4, D:K.4, D:K.4, D:L.6, E:K.4, E:L.6, A:K.4, A:K.4, A:K.4, A:L.6 NA.9: 5 residues within 4Å: Ligands: CL.10, NA.45, CL.46, NA.57, CL.58 12 PLIP interactions: 2 interactions with chain J, 5 interactions with chain B, 5 interactions with chain H Water bridges: J:K.4, J:L.6, B:K.4, B:K.4, B:K.4, B:K.4, B:L.6, H:K.4, H:K.4, H:K.4, H:K.4, H:L.6 NA.15: 5 residues within 4Å: Ligands: CL.16, NA.39, CL.40, NA.63, CL.64 12 PLIP interactions: 5 interactions with chain C, 5 interactions with chain K, 2 interactions with chain G Water bridges: C:K.4, C:K.4, C:K.4, C:K.4, C:L.6, K:K.4, K:K.4, K:K.4, K:K.4, K:L.6, G:K.4, G:L.6 NA.21: 5 residues within 4Å: Ligands: NA.3, CL.4, CL.22, NA.27, CL.28 11 PLIP interactions: 2 interactions with chain E, 5 interactions with chain D, 4 interactions with chain A Water bridges: E:K.4, E:L.6, D:K.4, D:K.4, D:K.4, D:K.4, D:L.6, A:K.4, A:K.4, A:K.4, A:L.6 NA.27: 5 residues within 4Å: Ligands: NA.3, CL.4, NA.21, CL.22, CL.28 12 PLIP interactions: 2 interactions with chain E, 5 interactions with chain D, 5 interactions with chain A Water bridges: E:K.4, E:L.6, D:K.4, D:K.4, D:K.4, D:K.4, D:L.6, A:K.4, A:K.4, A:K.4, A:K.4, A:L.6 NA.33: 5 residues within 4Å: Ligands: CL.34, NA.51, CL.52, NA.69, CL.70 4 PLIP interactions: 1 interactions with chain F, 1 interactions with chain L, 2 interactions with chain I Water bridges: F:L.6, L:L.6, I:K.4, I:L.6 NA.39: 5 residues within 4Å: Ligands: NA.15, CL.16, CL.40, NA.63, CL.64 12 PLIP interactions: 5 interactions with chain C, 2 interactions with chain G, 5 interactions with chain K Water bridges: C:K.4, C:K.4, C:K.4, C:K.4, C:L.6, G:K.4, G:L.6, K:K.4, K:K.4, K:K.4, K:K.4, K:L.6 NA.45: 5 residues within 4Å: Ligands: NA.9, CL.10, CL.46, NA.57, CL.58 12 PLIP interactions: 5 interactions with chain H, 5 interactions with chain B, 2 interactions with chain J Water bridges: H:K.4, H:K.4, H:K.4, H:K.4, H:L.6, B:K.4, B:K.4, B:K.4, B:K.4, B:L.6, J:K.4, J:L.6 NA.51: 5 residues within 4Å: Ligands: NA.33, CL.34, CL.52, NA.69, CL.70 5 PLIP interactions: 2 interactions with chain L, 2 interactions with chain F, 1 interactions with chain I Water bridges: L:K.4, L:L.6, F:K.4, F:L.6, I:L.6 NA.57: 5 residues within 4Å: Ligands: NA.9, CL.10, NA.45, CL.46, CL.58 12 PLIP interactions: 5 interactions with chain H, 5 interactions with chain B, 2 interactions with chain J Water bridges: H:K.4, H:K.4, H:K.4, H:K.4, H:L.6, B:K.4, B:K.4, B:K.4, B:K.4, B:L.6, J:K.4, J:L.6 NA.63: 5 residues within 4Å: Ligands: NA.15, CL.16, NA.39, CL.40, CL.64 12 PLIP interactions: 5 interactions with chain K, 5 interactions with chain C, 2 interactions with chain G Water bridges: K:K.4, K:K.4, K:K.4, K:K.4, K:L.6, C:K.4, C:K.4, C:K.4, C:K.4, C:L.6, G:K.4, G:L.6 NA.69: 5 residues within 4Å: Ligands: NA.33, CL.34, NA.51, CL.52, CL.70 5 PLIP interactions: 2 interactions with chain L, 2 interactions with chain F, 1 interactions with chain I Water bridges: L:K.4, L:L.6, F:K.4, F:L.6, I:L.6

12 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 8 residues within 4Å: Chain A: Q.56 Chain D: Q.56 Chain E: Q.56 Ligands: NA.3, NA.21, CL.22, NA.27, CL.28 Ligand excluded by PLIP CL.10: 8 residues within 4Å: Chain B: Q.56 Chain H: Q.56 Chain J: Q.56 Ligands: NA.9, NA.45, CL.46, NA.57, CL.58 Ligand excluded by PLIP CL.16: 8 residues within 4Å: Chain C: Q.56 Chain G: Q.56 Chain K: Q.56 Ligands: NA.15, NA.39, CL.40, NA.63, CL.64 Ligand excluded by PLIP CL.22: 8 residues within 4Å: Chain A: Q.56 Chain D: Q.56 Chain E: Q.56 Ligands: NA.3, CL.4, NA.21, NA.27, CL.28 Ligand excluded by PLIP CL.28: 8 residues within 4Å: Chain A: Q.56 Chain D: Q.56 Chain E: Q.56 Ligands: NA.3, CL.4, NA.21, CL.22, NA.27 Ligand excluded by PLIP CL.34: 8 residues within 4Å: Chain F: Q.56 Chain I: Q.56 Chain L: Q.56 Ligands: NA.33, NA.51, CL.52, NA.69, CL.70 Ligand excluded by PLIP CL.40: 8 residues within 4Å: Chain C: Q.56 Chain G: Q.56 Chain K: Q.56 Ligands: NA.15, CL.16, NA.39, NA.63, CL.64 Ligand excluded by PLIP CL.46: 8 residues within 4Å: Chain B: Q.56 Chain H: Q.56 Chain J: Q.56 Ligands: NA.9, CL.10, NA.45, NA.57, CL.58 Ligand excluded by PLIP CL.52: 8 residues within 4Å: Chain F: Q.56 Chain I: Q.56 Chain L: Q.56 Ligands: NA.33, CL.34, NA.51, NA.69, CL.70 Ligand excluded by PLIP CL.58: 8 residues within 4Å: Chain B: Q.56 Chain H: Q.56 Chain J: Q.56 Ligands: NA.9, CL.10, NA.45, CL.46, NA.57 Ligand excluded by PLIP CL.64: 8 residues within 4Å: Chain C: Q.56 Chain G: Q.56 Chain K: Q.56 Ligands: NA.15, CL.16, NA.39, CL.40, NA.63 Ligand excluded by PLIP CL.70: 8 residues within 4Å: Chain F: Q.56 Chain I: Q.56 Chain L: Q.56 Ligands: NA.33, CL.34, NA.51, CL.52, NA.69 Ligand excluded by PLIP

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 11 residues within 4Å: Chain A: S.14, F.15, T.16 Chain B: S.14, F.15, T.16 Chain C: S.14, F.15, T.16 Ligands: SO4.11, SO4.17 12 PLIP interactions: 5 interactions with chain C, 3 interactions with chain B, 4 interactions with chain A Hydrogen bonds: C:F.15, C:T.16, C:T.16, C:T.16, B:F.15, B:T.16, B:T.16, A:F.15, A:T.16, A:T.16, A:T.16 Water bridges: C:S.14 SO4.11: 11 residues within 4Å: Chain A: S.14, F.15, T.16 Chain B: S.14, F.15, T.16 Chain C: S.14, F.15, T.16 Ligands: SO4.5, SO4.17 12 PLIP interactions: 3 interactions with chain C, 4 interactions with chain B, 5 interactions with chain A Hydrogen bonds: C:F.15, C:T.16, C:T.16, B:F.15, B:T.16, B:T.16, B:T.16, A:F.15, A:T.16, A:T.16, A:T.16 Water bridges: A:S.14 SO4.17: 11 residues within 4Å: Chain A: S.14, F.15, T.16 Chain B: S.14, F.15, T.16 Chain C: S.14, F.15, T.16 Ligands: SO4.5, SO4.11 12 PLIP interactions: 5 interactions with chain B, 4 interactions with chain C, 3 interactions with chain A Hydrogen bonds: B:F.15, B:T.16, B:T.16, B:T.16, C:F.15, C:T.16, C:T.16, C:T.16, A:F.15, A:T.16, A:T.16 Water bridges: B:S.14 SO4.23: 11 residues within 4Å: Chain D: S.14, F.15, T.16 Chain F: S.14, F.15, T.16 Chain H: S.14, F.15, T.16 Ligands: SO4.35, SO4.47 12 PLIP interactions: 5 interactions with chain H, 4 interactions with chain D, 3 interactions with chain F Hydrogen bonds: H:F.15, H:T.16, H:T.16, H:T.16, D:F.15, D:T.16, D:T.16, D:T.16, F:F.15, F:T.16, F:T.16 Water bridges: H:S.14 SO4.29: 11 residues within 4Å: Chain E: S.14, F.15, T.16 Chain G: S.14, F.15, T.16 Chain I: S.14, F.15, T.16 Ligands: SO4.41, SO4.53 12 PLIP interactions: 5 interactions with chain I, 3 interactions with chain G, 4 interactions with chain E Hydrogen bonds: I:F.15, I:T.16, I:T.16, I:T.16, G:F.15, G:T.16, G:T.16, E:F.15, E:T.16, E:T.16, E:T.16 Water bridges: I:S.14 SO4.35: 11 residues within 4Å: Chain D: S.14, F.15, T.16 Chain F: S.14, F.15, T.16 Chain H: S.14, F.15, T.16 Ligands: SO4.23, SO4.47 12 PLIP interactions: 4 interactions with chain F, 3 interactions with chain H, 5 interactions with chain D Hydrogen bonds: F:F.15, F:T.16, F:T.16, F:T.16, H:F.15, H:T.16, H:T.16, D:F.15, D:T.16, D:T.16, D:T.16 Water bridges: D:S.14 SO4.41: 11 residues within 4Å: Chain E: S.14, F.15, T.16 Chain G: S.14, F.15, T.16 Chain I: S.14, F.15, T.16 Ligands: SO4.29, SO4.53 12 PLIP interactions: 4 interactions with chain G, 3 interactions with chain I, 5 interactions with chain E Hydrogen bonds: G:F.15, G:T.16, G:T.16, G:T.16, I:F.15, I:T.16, I:T.16, E:F.15, E:T.16, E:T.16, E:T.16 Water bridges: E:S.14 SO4.47: 11 residues within 4Å: Chain D: S.14, F.15, T.16 Chain F: S.14, F.15, T.16 Chain H: S.14, F.15, T.16 Ligands: SO4.23, SO4.35 12 PLIP interactions: 3 interactions with chain D, 5 interactions with chain F, 4 interactions with chain H Hydrogen bonds: D:F.15, D:T.16, D:T.16, F:F.15, F:T.16, F:T.16, F:T.16, H:F.15, H:T.16, H:T.16, H:T.16 Water bridges: F:S.14 SO4.53: 11 residues within 4Å: Chain E: S.14, F.15, T.16 Chain G: S.14, F.15, T.16 Chain I: S.14, F.15, T.16 Ligands: SO4.29, SO4.41 12 PLIP interactions: 4 interactions with chain I, 3 interactions with chain E, 5 interactions with chain G Hydrogen bonds: I:F.15, I:T.16, I:T.16, I:T.16, E:F.15, E:T.16, E:T.16, G:F.15, G:T.16, G:T.16, G:T.16 Water bridges: G:S.14 SO4.59: 11 residues within 4Å: Chain J: S.14, F.15, T.16 Chain K: S.14, F.15, T.16 Chain L: S.14, F.15, T.16 Ligands: SO4.65, SO4.71 12 PLIP interactions: 5 interactions with chain K, 3 interactions with chain L, 4 interactions with chain J Hydrogen bonds: K:F.15, K:T.16, K:T.16, K:T.16, L:F.15, L:T.16, L:T.16, J:F.15, J:T.16, J:T.16, J:T.16 Water bridges: K:S.14 SO4.65: 11 residues within 4Å: Chain J: S.14, F.15, T.16 Chain K: S.14, F.15, T.16 Chain L: S.14, F.15, T.16 Ligands: SO4.59, SO4.71 12 PLIP interactions: 3 interactions with chain J, 4 interactions with chain K, 5 interactions with chain L Hydrogen bonds: J:F.15, J:T.16, J:T.16, K:F.15, K:T.16, K:T.16, K:T.16, L:F.15, L:T.16, L:T.16, L:T.16 Water bridges: L:S.14 SO4.71: 11 residues within 4Å: Chain J: S.14, F.15, T.16 Chain K: S.14, F.15, T.16 Chain L: S.14, F.15, T.16 Ligands: SO4.59, SO4.65 12 PLIP interactions: 5 interactions with chain J, 3 interactions with chain K, 4 interactions with chain L Hydrogen bonds: J:F.15, J:T.16, J:T.16, J:T.16, K:F.15, K:T.16, K:T.16, L:F.15, L:T.16, L:T.16, L:T.16 Water bridges: J:S.14

12 x CF2: 2'-deoxy-5'-O-{[2-(7,8-dimethyl-2,4-dioxo-3,4-dihydrobenzo[g]pteridin-10(2H)-yl)ethyl]carbamoyl}guanosine

CF2.6: 15 residues within 4Å: Chain A: F.2, N.32, V.34, W.35, A.36, E.37, E.60 Chain B: G.42, V.43, A.44, I.45, G.46, Q.52 Chain D: Q.52 Ligands: CF2.48 12 PLIP interactions: 9 interactions with chain A, 1 interactions with chain B, 2 interactions with chain D Hydrophobic interactions: A:W.35, A:E.37 Hydrogen bonds: A:N.32, B:A.47, D:Q.52, D:Q.52 Water bridges: A:K.4 Salt bridges: A:E.60 pi-Stacking: A:W.35, A:W.35, A:W.35, A:W.35 CF2.12: 15 residues within 4Å: Chain B: F.2, N.32, V.34, W.35, A.36, E.37, E.60 Chain C: G.42, V.43, A.44, I.45, G.46, Q.52 Chain J: Q.52 Ligands: CF2.66 12 PLIP interactions: 9 interactions with chain B, 1 interactions with chain C, 2 interactions with chain J Hydrophobic interactions: B:W.35, B:E.37 Hydrogen bonds: B:N.32, C:A.47, J:Q.52, J:Q.52 Water bridges: B:K.4 Salt bridges: B:E.60 pi-Stacking: B:W.35, B:W.35, B:W.35, B:W.35 CF2.18: 15 residues within 4Å: Chain A: G.42, V.43, A.44, I.45, G.46, Q.52 Chain C: F.2, N.32, V.34, W.35, A.36, E.37, E.60 Chain G: Q.52 Ligands: CF2.30 12 PLIP interactions: 9 interactions with chain C, 1 interactions with chain A, 2 interactions with chain G Hydrophobic interactions: C:W.35, C:E.37 Hydrogen bonds: C:N.32, A:A.47, G:Q.52, G:Q.52 Water bridges: C:K.4 Salt bridges: C:E.60 pi-Stacking: C:W.35, C:W.35, C:W.35, C:W.35 CF2.24: 15 residues within 4Å: Chain D: F.2, N.32, V.34, W.35, A.36, E.37, E.60 Chain E: Q.52 Chain F: G.42, V.43, A.44, I.45, G.46, Q.52 Ligands: CF2.54 12 PLIP interactions: 9 interactions with chain D, 2 interactions with chain E, 1 interactions with chain F Hydrophobic interactions: D:W.35, D:E.37 Hydrogen bonds: D:N.32, E:Q.52, E:Q.52, F:A.47 Water bridges: D:K.4 Salt bridges: D:E.60 pi-Stacking: D:W.35, D:W.35, D:W.35, D:W.35 CF2.30: 15 residues within 4Å: Chain A: Q.52 Chain E: F.2, N.32, V.34, W.35, A.36, E.37, E.60 Chain G: G.42, V.43, A.44, I.45, G.46, Q.52 Ligands: CF2.18 12 PLIP interactions: 9 interactions with chain E, 2 interactions with chain A, 1 interactions with chain G Hydrophobic interactions: E:W.35, E:E.37 Hydrogen bonds: E:N.32, A:Q.52, A:Q.52, G:A.47 Water bridges: E:K.4 Salt bridges: E:E.60 pi-Stacking: E:W.35, E:W.35, E:W.35, E:W.35 CF2.36: 15 residues within 4Å: Chain F: F.2, N.32, V.34, W.35, A.36, E.37, E.60 Chain H: G.42, V.43, A.44, I.45, G.46, Q.52 Chain L: Q.52 Ligands: CF2.60 12 PLIP interactions: 9 interactions with chain F, 2 interactions with chain L, 1 interactions with chain H Hydrophobic interactions: F:W.35, F:E.37 Hydrogen bonds: F:N.32, L:Q.52, L:Q.52, H:A.47 Water bridges: F:K.4 Salt bridges: F:E.60 pi-Stacking: F:W.35, F:W.35, F:W.35, F:W.35 CF2.42: 15 residues within 4Å: Chain G: F.2, N.32, V.34, W.35, A.36, E.37, E.60 Chain I: G.42, V.43, A.44, I.45, G.46, Q.52 Chain K: Q.52 Ligands: CF2.72 12 PLIP interactions: 9 interactions with chain G, 1 interactions with chain I, 2 interactions with chain K Hydrophobic interactions: G:W.35, G:E.37 Hydrogen bonds: G:N.32, I:A.47, K:Q.52, K:Q.52 Water bridges: G:K.4 Salt bridges: G:E.60 pi-Stacking: G:W.35, G:W.35, G:W.35, G:W.35 CF2.48: 15 residues within 4Å: Chain B: Q.52 Chain D: G.42, V.43, A.44, I.45, G.46, Q.52 Chain H: F.2, N.32, V.34, W.35, A.36, E.37, E.60 Ligands: CF2.6 12 PLIP interactions: 9 interactions with chain H, 1 interactions with chain D, 2 interactions with chain B Hydrophobic interactions: H:W.35, H:E.37 Hydrogen bonds: H:N.32, D:A.47, B:Q.52, B:Q.52 Water bridges: H:K.4 Salt bridges: H:E.60 pi-Stacking: H:W.35, H:W.35, H:W.35, H:W.35 CF2.54: 15 residues within 4Å: Chain E: G.42, V.43, A.44, I.45, G.46, Q.52 Chain F: Q.52 Chain I: F.2, N.32, V.34, W.35, A.36, E.37, E.60 Ligands: CF2.24 12 PLIP interactions: 2 interactions with chain F, 9 interactions with chain I, 1 interactions with chain E Hydrogen bonds: F:Q.52, F:Q.52, I:N.32, E:A.47 Hydrophobic interactions: I:W.35, I:E.37 Water bridges: I:K.4 Salt bridges: I:E.60 pi-Stacking: I:W.35, I:W.35, I:W.35, I:W.35 CF2.60: 15 residues within 4Å: Chain H: Q.52 Chain J: F.2, N.32, V.34, W.35, A.36, E.37, E.60 Chain L: G.42, V.43, A.44, I.45, G.46, Q.52 Ligands: CF2.36 12 PLIP interactions: 9 interactions with chain J, 1 interactions with chain L, 2 interactions with chain H Hydrophobic interactions: J:W.35, J:E.37 Hydrogen bonds: J:N.32, L:A.47, H:Q.52, H:Q.52 Water bridges: J:K.4 Salt bridges: J:E.60 pi-Stacking: J:W.35, J:W.35, J:W.35, J:W.35 CF2.66: 15 residues within 4Å: Chain C: Q.52 Chain J: G.42, V.43, A.44, I.45, G.46, Q.52 Chain K: F.2, N.32, V.34, W.35, A.36, E.37, E.60 Ligands: CF2.12 12 PLIP interactions: 9 interactions with chain K, 2 interactions with chain C, 1 interactions with chain J Hydrophobic interactions: K:W.35, K:E.37 Hydrogen bonds: K:N.32, C:Q.52, C:Q.52, J:A.47 Water bridges: K:K.4 Salt bridges: K:E.60 pi-Stacking: K:W.35, K:W.35, K:W.35, K:W.35 CF2.72: 15 residues within 4Å: Chain I: Q.52 Chain K: G.42, V.43, A.44, I.45, G.46, Q.52 Chain L: F.2, N.32, V.34, W.35, A.36, E.37, E.60 Ligands: CF2.42 12 PLIP interactions: 2 interactions with chain I, 9 interactions with chain L, 1 interactions with chain K Hydrogen bonds: I:Q.52, I:Q.52, L:N.32, K:A.47 Hydrophobic interactions: L:W.35, L:E.37 Water bridges: L:K.4 Salt bridges: L:E.60 pi-Stacking: L:W.35, L:W.35, L:W.35, L:W.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grininger, M. et al., Electrochemical Switching of the Flavoprotein Dodecin at Gold Surfaces Modified by Flavin-DNA Hybrid Linkers. Biointerphases (2008)

Release Date

2008-09-30

Peptides

DODECIN: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

I
A

J
A

K
A

L
A

DODECIN

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