SMTL ID : 2vlb.4 (3 other biounits)

Structure of unliganded arylmalonate decarboxylase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

monomer

Ligands

2 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.1: 6 residues within 4Å: Chain A: D.130, N.133, E.134, A.137, G.149, C.150 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.130 BME.2: 10 residues within 4Å: Chain A: T.126, A.127, L.153, M.161, L.169, L.172, L.188, S.189, C.190, L.193 No protein-ligand interaction detected (PLIP)

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 6 residues within 4Å: Chain A: R.151, L.153, T.168, D.171, L.172, R.175 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.151, A:R.151 EDO.4: 3 residues within 4Å: Chain A: I.129, D.130, D.131 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.130, A:D.131, A:D.131

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.5: 5 residues within 4Å: Chain A: P.16, G.76, T.77, S.78, G.191 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.77, A:T.77, A:S.78 Water bridges: A:G.191 PO4.6: 1 residues within 4Å: Chain A: R.204 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.204

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kuettner, E.B. et al., Active Site Mobility Revealed by the Crystal Structure of Arylmalonate Decarboxylase from Bordetella Bronchiseptica. J.Mol.Biol. (2008)

Release Date

2008-03-18

Peptides

ARYLMALONATE DECARBOXYLASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

ARYLMALONATE DECARBOXYLASE

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