SMTL ID : 2vml.1

The monoclinic structure of phycocyanin from Gloeobacter violaceus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-6-6-mer

Ligands

18 x CYC: PHYCOCYANOBILIN(Covalent)(Non-covalent)

CYC.1: 25 residues within 4Å: Chain A: Y.60, L.66, M.72, G.73, N.78, Q.79, K.81, C.82, R.84, D.85, H.88, Y.89, F.92, Y.108, V.116, F.120, L.122, W.126, Y.127 Chain F: H.57, I.67, Y.74, P.75, N.76, M.79 Ligand excluded by PLIP CYC.2: 20 residues within 4Å: Chain B: L.66, N.72, A.73, R.77, R.78, A.81, C.82, R.84, D.85, M.86, I.88, R.108, C.109, L.113, Y.117, L.120, T.122, S.126, V.127, A.130 Ligand excluded by PLIP CYC.3: 18 residues within 4Å: Chain A: N.21, L.24, Q.25, N.28 Chain B: N.35, K.36, L.38, D.39, V.142, N.143, P.145, V.148, T.149, R.150, G.151, C.153 Chain K: R.33, Q.145 Ligand excluded by PLIP CYC.4: 25 residues within 4Å: Chain B: H.57, I.67, Y.74, P.75, N.76, M.79 Chain C: Y.60, L.66, M.72, G.73, N.78, Q.79, K.81, C.82, R.84, D.85, H.88, Y.89, F.92, Y.108, V.116, F.120, L.122, W.126, Y.127 Ligand excluded by PLIP CYC.5: 20 residues within 4Å: Chain D: L.66, N.72, A.73, R.77, R.78, A.81, C.82, R.84, D.85, M.86, I.88, R.108, C.109, L.113, Y.117, L.120, T.122, S.126, V.127, A.130 Ligand excluded by PLIP CYC.6: 18 residues within 4Å: Chain C: N.21, L.24, Q.25, N.28 Chain D: N.35, K.36, L.38, D.39, V.142, N.143, P.145, V.148, T.149, R.150, G.151, C.153 Chain G: R.33, Q.145 Ligand excluded by PLIP CYC.7: 26 residues within 4Å: Chain D: H.57, I.67, Y.74, P.75, N.76, M.79 Chain E: Y.60, L.66, M.72, G.73, N.78, Q.79, K.81, C.82, R.84, D.85, H.88, Y.89, F.92, Y.108, I.109, V.116, F.120, L.122, W.126, Y.127 Ligand excluded by PLIP CYC.8: 19 residues within 4Å: Chain F: L.66, N.72, A.73, R.77, R.78, A.81, C.82, R.84, D.85, M.86, I.88, R.108, L.113, Y.117, L.120, T.122, S.126, V.127, A.130 Ligand excluded by PLIP CYC.9: 17 residues within 4Å: Chain E: N.21, L.24, N.28 Chain F: N.35, K.36, L.38, D.39, V.142, N.143, P.145, V.148, T.149, R.150, G.151, C.153 Chain I: R.33, Q.145 Ligand excluded by PLIP CYC.10: 24 residues within 4Å: Chain G: Y.60, L.66, M.72, G.73, N.78, Q.79, K.81, C.82, R.84, D.85, H.88, Y.89, F.92, Y.108, V.116, F.120, L.122, W.126, Y.127 Chain J: H.57, I.67, Y.74, P.75, N.76 Ligand excluded by PLIP CYC.11: 20 residues within 4Å: Chain H: L.66, N.72, A.73, R.77, R.78, A.81, C.82, R.84, D.85, M.86, I.88, R.108, C.109, L.113, Y.117, L.120, T.122, S.126, V.127, A.130 Ligand excluded by PLIP CYC.12: 18 residues within 4Å: Chain C: R.33, Q.145 Chain G: N.21, L.24, N.28 Chain H: N.35, K.36, L.38, D.39, A.40, V.142, N.143, P.145, V.148, T.149, R.150, G.151, C.153 Ligand excluded by PLIP CYC.13: 25 residues within 4Å: Chain I: Y.60, L.66, M.72, G.73, N.78, Q.79, K.81, C.82, R.84, D.85, H.88, Y.89, F.92, Y.108, V.116, F.120, L.122, W.126, Y.127 Chain L: H.57, I.67, Y.74, P.75, N.76, M.79 Ligand excluded by PLIP CYC.14: 19 residues within 4Å: Chain J: L.66, N.72, A.73, R.77, R.78, A.81, C.82, R.84, D.85, M.86, I.88, R.108, L.113, Y.117, L.120, T.122, S.126, V.127, A.130 Ligand excluded by PLIP CYC.15: 19 residues within 4Å: Chain E: R.33, Q.145 Chain I: N.21, L.24, Q.25, N.28 Chain J: N.35, K.36, L.38, D.39, A.40, V.142, N.143, P.145, V.148, T.149, R.150, G.151, C.153 Ligand excluded by PLIP CYC.16: 26 residues within 4Å: Chain H: H.57, I.67, Y.74, P.75, N.76, M.79 Chain K: Y.60, L.66, M.72, G.73, N.78, Q.79, K.81, C.82, R.84, D.85, H.88, Y.89, F.92, Y.108, I.109, V.116, F.120, L.122, W.126, Y.127 Ligand excluded by PLIP CYC.17: 19 residues within 4Å: Chain L: L.66, N.72, A.73, R.77, R.78, A.81, C.82, R.84, D.85, M.86, I.88, R.108, L.113, Y.117, L.120, T.122, S.126, V.127, A.130 Ligand excluded by PLIP CYC.18: 18 residues within 4Å: Chain A: R.33, Q.145 Chain K: N.21, L.24, Q.25, N.28 Chain L: N.35, K.36, L.38, D.39, V.142, N.143, P.145, V.148, T.149, R.150, G.151, C.153 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Murray, J.W. et al., The Structures of the Phycobiliproteins of Gloeobacter Violaceus. To be Published

Release Date

2008-03-25

Peptides

PHYCOCYANIN ALPHA CHAIN: ACEGIK
PHYCOCYANIN BETA CHAIN: BDFHJL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

G
G

I
I

K
K

B
B

D
D

F
F

H
H

J
J

L
L

PHYCOCYANIN ALPHA CHAIN

PHYCOCYANIN BETA CHAIN

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