SMTL ID : 2vn4.1

Glycoside Hydrolase Family 15 Glucoamylase from Hypocrea jecorina

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 11 residues within 4Å: Chain A: W.170, N.171, Q.172, T.173, S.184, F.223, R.226, N.240, C.453, S.454, G.455 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.240

8 x MAN: alpha-D-mannopyranose(Post Translational Modification)

MAN.2: 1 residues within 4Å: Chain A: T.468 No protein-ligand interaction detected (PLIP) MAN.3: 4 residues within 4Å: Chain A: Y.147, T.475, P.476 Ligands: MAN.9 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.476 MAN.4: 2 residues within 4Å: Chain A: T.493, A.584 1 PLIP interactions: 1 interactions with chain A Water bridges: A:A.586 MAN.5: 3 residues within 4Å: Chain A: V.556, T.579, T.581 No protein-ligand interaction detected (PLIP) MAN.6: 2 residues within 4Å: Chain A: R.27, T.589 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.27, A:R.27 Water bridges: A:T.589, A:Q.590 MAN.7: 3 residues within 4Å: Chain A: Y.70, S.482, G.483 No protein-ligand interaction detected (PLIP) MAN.8: 5 residues within 4Å: Chain A: E.558, P.576, N.577, H.578, T.579 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.558, A:N.577 Water bridges: A:N.577, A:N.577 MAN.9: 2 residues within 4Å: Chain A: S.473 Ligands: MAN.3 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.10: 1 residues within 4Å: Chain A: N.524 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.524

2 x BTB: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)

BTB.11: 12 residues within 4Å: Chain A: Y.47, W.51, R.53, D.54, W.120, L.177, W.178, E.179, R.309, Y.315, W.321, E.404 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:R.53, A:L.177, A:W.178, A:E.179, A:R.309 Water bridges: A:R.309 Salt bridges: A:D.54, A:E.179 BTB.12: 4 residues within 4Å: Chain A: W.525, K.560, W.572, N.577 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.577, A:N.577

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bott, R. et al., Three-Dimensional Structure of an Intact Glycoside Hydrolase Family 15 Glucoamylase from Hypocrea Jecorina. Biochemistry (2008)

Release Date

2008-05-20

Peptides

GLUCOAMYLASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

GLUCOAMYLASE

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