SMTL ID : 2vn9.1 (1 other biounit)

Crystal Structure of Human Calcium Calmodulin dependent Protein Kinase II delta isoform 1, CAMKD

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 6 residues within 4Å: Chain A: T.39, H.47, S.73, E.74, F.77, H.78 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:T.39, A:E.74, A:E.74, A:F.77 Water bridges: A:S.73, A:S.73 Salt bridges: A:H.47, A:H.78 PO4.2: 3 residues within 4Å: Chain A: L.12, G.13 Ligands: GVD.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.12, A:K.14

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 2 residues within 4Å: Chain A: R.67, H.69 Ligand excluded by PLIP

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.4: 7 residues within 4Å: Chain A: Y.99, S.101, A.103, D.104, R.267, S.268, M.273 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:D.104, A:D.104, A:R.267

1 x GVD: [4-({4-[(5-CYCLOPROPYL-1H-PYRAZOL-3-YL)AMINO]QUINAZOLIN-2-YL}IMINO)CYCLOHEXA-2,5-DIEN-1-YL]ACETONITRILE(Non-covalent)

GVD.5: 13 residues within 4Å: Chain A: L.12, G.13, K.14, V.20, A.33, K.35, V.66, F.82, D.83, L.84, V.85, D.149 Ligands: PO4.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.12, A:V.20, A:A.33, A:V.66, A:F.82 Hydrogen bonds: A:D.83, A:V.85, A:V.85, A:D.149

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rellos, P. et al., Structure of the Camkiidelta/Calmodulin Complex Reveals the Molecular Mechanism of Camkii Kinase Activation. Plos Biol. (2010)

Release Date

2008-02-26

Peptides

CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE TYPE II DELTA CHAIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE TYPE II DELTA CHAIN

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