- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- monomer
- Ligands
- 1 x VBZ: (1R,4R,5R,7R,8R)-2-Benzyl-5-hydroxymethyl-2-aza-bicyclo[2.2.2]octane-4,7,8-triol
- 14 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.2: 8 residues within 4Å:- Chain A: I.553, R.572, I.581, P.582, E.583, S.584, F.585, F.588
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.572, A:R.572
- Water bridges: A:Q.552
EDO.3: 7 residues within 4Å:- Chain A: F.17, S.18, Q.19, K.24, W.25, M.26, L.43
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.24
EDO.4: 8 residues within 4Å:- Chain A: I.303, G.304, R.306, R.424, N.425, H.426, A.427, R.482
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:G.304, A:R.482, A:R.482
- Water bridges: A:N.425, A:A.427
EDO.5: 9 residues within 4Å:- Chain A: L.439, E.440, K.443, Y.444, P.489, Y.490, L.491, A.492, N.493
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.443, A:K.443, A:P.489
EDO.6: 8 residues within 4Å:- Chain A: W.494, W.500, S.505, N.507, D.523, L.524, P.525, M.528
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.505, A:N.507, A:L.524
EDO.7: 8 residues within 4Å:- Chain A: E.538, M.539, E.586, V.589, Y.590, F.789, E.791, K.832
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:M.539, A:K.832, A:K.832
- Water bridges: A:E.538, A:K.540
EDO.8: 4 residues within 4Å:- Chain A: W.494, W.508, Y.512
- Ligands: VBZ.1
2 PLIP interactions:2 interactions with chain A- Water bridges: A:E.440, A:E.440
EDO.9: 4 residues within 4Å:- Chain A: R.601, V.748, H.749, F.750
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:R.601, A:V.748, A:F.750
- Water bridges: A:F.750, A:K.786
EDO.14: 4 residues within 4Å:- Chain A: N.312, V.485, H.486, Y.490
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.312
- Water bridges: A:H.486
EDO.15: 6 residues within 4Å:- Chain A: E.218, L.219, I.220, H.259, I.260, T.261
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:T.261
- Water bridges: A:E.218
EDO.16: 4 residues within 4Å:- Chain A: P.45, N.46, Y.49, N.52
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.46, A:N.52
- Water bridges: A:N.46
EDO.17: 5 residues within 4Å:- Chain A: Y.444, W.445, N.493, W.494, G.495
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:W.445, A:N.493, A:G.495
EDO.19: 6 residues within 4Å:- Chain A: H.301, R.302, D.382, D.385, N.425, H.426
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:H.301, A:R.302, A:D.385, A:D.385
- Water bridges: A:H.426
EDO.21: 6 residues within 4Å:- Chain A: Y.49, A.543, A.546, A.547, P.548, Y.551
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Y.49, A:Y.551
- 5 x BR: BROMIDE ION(Non-covalent)(Non-functional Binders)
BR.10: 4 residues within 4Å:- Chain A: G.81, I.82, P.115, K.117
Ligand excluded by PLIPBR.11: 2 residues within 4Å:- Chain A: N.258, H.259
Ligand excluded by PLIPBR.18: 3 residues within 4Å:- Chain A: F.451, T.452, V.455
Ligand excluded by PLIPBR.20: 2 residues within 4Å:- Chain A: Q.83, P.115
Ligand excluded by PLIPBR.22: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIP- 2 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tailford, L.E. et al., Structural and Biochemical Evidence for a Boat-Like Transition State in Beta-Mannosidases. Nat.Chem.Biol. (2008)
- Release Date
- 2008-04-01
- Peptides
- BETA-MANNOSIDASE: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- monomer
- Ligands
- 1 x VBZ: (1R,4R,5R,7R,8R)-2-Benzyl-5-hydroxymethyl-2-aza-bicyclo[2.2.2]octane-4,7,8-triol
- 14 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 5 x BR: BROMIDE ION(Non-covalent)(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tailford, L.E. et al., Structural and Biochemical Evidence for a Boat-Like Transition State in Beta-Mannosidases. Nat.Chem.Biol. (2008)
- Release Date
- 2008-04-01
- Peptides
- BETA-MANNOSIDASE: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A