- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- monomer
- Ligands
- 1 x NHV: (5R,6R,7S,8R)-6,7,8-trihydroxy-5-(hydroxymethyl)-2-[(phenylamino)methyl]-5,6,7,8-tetrahydro-1H-imidazo[1,2-a]pyridin-4-ium
- 25 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.2: 6 residues within 4Å:- Chain A: Q.340, N.623, D.624, I.634, D.635, Y.636
Ligand excluded by PLIPEDO.3: 8 residues within 4Å:- Chain A: W.494, W.500, S.505, N.507, D.523, L.524, P.525, M.528
Ligand excluded by PLIPEDO.4: 7 residues within 4Å:- Chain A: I.303, G.304, R.424, N.425, H.426, A.427, R.482
Ligand excluded by PLIPEDO.5: 4 residues within 4Å:- Chain A: Q.205, R.306, D.481, R.482
Ligand excluded by PLIPEDO.6: 7 residues within 4Å:- Chain A: E.440, K.443, Y.444, P.489, L.491, A.492, N.493
Ligand excluded by PLIPEDO.7: 7 residues within 4Å:- Chain A: Q.552, R.572, P.582, E.583, S.584, F.585, F.588
Ligand excluded by PLIPEDO.8: 5 residues within 4Å:- Chain A: N.312, V.485, H.486, Y.490
- Ligands: EDO.28
Ligand excluded by PLIPEDO.9: 4 residues within 4Å:- Chain A: Q.598, R.601, H.749, F.750
Ligand excluded by PLIPEDO.10: 3 residues within 4Å:- Chain A: R.609, Q.661, Y.668
Ligand excluded by PLIPEDO.11: 3 residues within 4Å:- Chain A: V.417, Y.418, R.421
Ligand excluded by PLIPEDO.12: 6 residues within 4Å:- Chain A: R.357, R.798, Y.799, S.800, I.815, T.817
Ligand excluded by PLIPEDO.13: 8 residues within 4Å:- Chain A: S.18, Q.19, S.20, G.21, T.22, E.23, W.25, E.65
Ligand excluded by PLIPEDO.14: 6 residues within 4Å:- Chain A: N.153, W.173, D.174, C.399, E.437
- Ligands: NHV.1
Ligand excluded by PLIPEDO.15: 5 residues within 4Å:- Chain A: F.517, E.518, D.578, Q.598, G.599
Ligand excluded by PLIPEDO.16: 4 residues within 4Å:- Chain A: D.63, H.132, R.136
- Ligands: EDO.20
Ligand excluded by PLIPEDO.17: 6 residues within 4Å:- Chain A: H.301, R.302, D.382, D.385, N.425, H.426
Ligand excluded by PLIPEDO.18: 4 residues within 4Å:- Chain A: R.186, P.187, N.377
- Ligands: EDO.27
Ligand excluded by PLIPEDO.19: 7 residues within 4Å:- Chain A: F.17, S.18, Q.19, T.22, K.24, M.26, L.43
Ligand excluded by PLIPEDO.20: 4 residues within 4Å:- Chain A: R.136, Q.137, P.140
- Ligands: EDO.16
Ligand excluded by PLIPEDO.21: 6 residues within 4Å:- Chain A: E.440, Y.444, W.445, N.493, W.494, G.495
Ligand excluded by PLIPEDO.26: 8 residues within 4Å:- Chain A: N.275, G.276, W.277, M.330, F.331, K.333, N.365, D.672
Ligand excluded by PLIPEDO.27: 7 residues within 4Å:- Chain A: P.345, V.347, T.349, Y.352, N.377, L.379
- Ligands: EDO.18
Ligand excluded by PLIPEDO.28: 4 residues within 4Å:- Chain A: N.312, K.314, E.319
- Ligands: EDO.8
Ligand excluded by PLIPEDO.29: 6 residues within 4Å:- Chain A: E.218, L.219, I.220, H.259, I.260, T.261
Ligand excluded by PLIPEDO.30: 5 residues within 4Å:- Chain A: E.683, K.685, K.697, K.733, I.735
Ligand excluded by PLIP- 5 x BR: BROMIDE ION(Non-covalent)
BR.22: 4 residues within 4Å:- Chain A: G.81, I.82, P.115, K.117
Ligand excluded by PLIPBR.23: 2 residues within 4Å:- Chain A: N.258, H.259
Ligand excluded by PLIPBR.24: 2 residues within 4Å:- Chain A: Q.83, P.115
Ligand excluded by PLIPBR.25: 3 residues within 4Å:- Chain A: Q.660, N.662, D.663
Ligand excluded by PLIPBR.31: 1 residues within 4Å:- Chain A: Y.484
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tailford, L.E. et al., Structural and Biochemical Evidence for a Boat-Like Transition State in Beta-Mannosidases. Nat.Chem.Biol. (2008)
- Release Date
- 2008-04-01
- Peptides
- BETA-MANNOSIDASE: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- monomer
- Ligands
- 1 x NHV: (5R,6R,7S,8R)-6,7,8-trihydroxy-5-(hydroxymethyl)-2-[(phenylamino)methyl]-5,6,7,8-tetrahydro-1H-imidazo[1,2-a]pyridin-4-ium
- 25 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 5 x BR: BROMIDE ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tailford, L.E. et al., Structural and Biochemical Evidence for a Boat-Like Transition State in Beta-Mannosidases. Nat.Chem.Biol. (2008)
- Release Date
- 2008-04-01
- Peptides
- BETA-MANNOSIDASE: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A