SMTL ID : 2vs1.1

The crystal structure of Pyrococcus abyssi tRNA (uracil-54, C5)- methyltransferase in complex with S-adenosyl-L-homocysteine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 17 residues within 4Å: Chain A: F.270, Q.272, M.297, Y.298, S.299, G.300, T.303, F.304, D.319, S.320, N.321, A.344, S.345, D.346, D.360, P.361, P.362 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:Q.272, A:Y.298, A:G.300, A:T.303, A:S.320, A:S.320, A:N.321, A:S.345, A:D.346, A:D.360 Water bridges: A:Y.298, A:S.299, A:V.301, A:F.304 pi-Stacking: A:Y.298

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 3 residues within 4Å: Chain A: E.102, R.105, K.106 3 PLIP interactions: 3 interactions with chain A Water bridges: A:E.102 Salt bridges: A:R.105, A:K.106

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Walbott, H. et al., The Crystal Structure of Pyrococcus Abyssi tRNA (Uracil-54, C5)-Methyltransferase Provides Insights Into its tRNA Specificity. Nucleic Acids Res. (2008)

Release Date

2008-08-05

Peptides

UNCHARACTERIZED RNA METHYLTRANSFERASE PYRAB10780: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UNCHARACTERIZED RNA METHYLTRANSFERASE PYRAB10780

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