SMTL ID : 2vu0.1

Biosynthetic thiolase from Z. ramigera. Complex of the oxidised enzyme with coenzyme A.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.87 Å

Oligo State

homo-tetramer

Ligands

2 x COA: COENZYME A(Non-covalent)

COA.1: 20 residues within 4Å: Chain A: C.89, L.148, H.156, M.157, Q.183, R.220, S.227, M.228, L.231, F.235, A.243, G.244, S.247, G.248, L.249, M.288, F.319, H.348 Chain C: K.208 Chain D: M.134 10 PLIP interactions: 9 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:Q.183, A:R.220, A:S.247, A:S.247 Water bridges: A:R.220, A:S.227, A:L.249 pi-Cation interactions: A:R.220, A:R.220 Salt bridges: C:K.208 COA.5: 16 residues within 4Å: Chain B: L.148, H.156, M.157, R.220, S.227, M.228, L.231, F.235, A.243, G.244, S.247, L.249, M.288, A.318, F.319, H.348 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:L.148, B:F.235, B:L.249 Hydrogen bonds: B:R.220, B:S.247, B:S.247 Water bridges: B:Q.183, B:Y.218, B:L.249 pi-Cation interactions: B:R.220

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 2 residues within 4Å: Chain A: K.306, I.307 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.307 Water bridges: A:G.308

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 2 residues within 4Å: Chain A: K.298, R.302 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Water bridges: B:G.106 Salt bridges: A:K.298, A:R.302 SO4.4: 2 residues within 4Å: Chain A: S.260, R.266 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.260, A:S.260, A:E.263 Water bridges: A:A.262, A:R.266, A:R.266 Salt bridges: A:R.266 SO4.6: 3 residues within 4Å: Chain B: S.260, A.262, R.266 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.260 Water bridges: B:S.260, B:A.262 Salt bridges: B:R.266 SO4.7: 2 residues within 4Å: Chain B: K.298, R.302 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Water bridges: A:G.106, A:D.107 Salt bridges: B:K.298, B:R.302

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Merilainen, G. et al., The sulfur atoms of the substrate CoA and the catalytic cysteine are required for a productive mode of substrate binding in bacterial biosynthetic thiolase, a thioester-dependent enzyme. FEBS J. (2008)

Release Date

2008-10-28

Peptides

Acetyl-CoA acetyltransferase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Acetyl-CoA acetyltransferase

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