SMTL ID : 2vvt.1

Glutamate Racemase (MurI) from E. faecalis in complex with a 9-Benzyl Purine inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-dimer

Ligands

2 x I24: 2-butoxy-9-(2,6-difluorobenzyl)-N-(2-morpholin-4-ylethyl)-9H-purin-6-amine

I24.1: 12 residues within 4Å: Chain A: V.34, G.35, T.58, V.172, E.173, N.175, Y.177, H.207, L.210, M.266, I.270, W.274 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.34, A:L.210, A:W.274 Hydrogen bonds: A:T.58 Water bridges: A:V.34, A:E.173, A:S.263, A:F.267 I24.3: 12 residues within 4Å: Chain B: V.34, G.35, V.172, E.173, N.175, Y.177, H.207, L.210, E.269, I.270, S.273, W.274 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:V.172, B:L.210, B:I.270, B:W.274 Water bridges: B:N.175, B:Y.177 Salt bridges: B:E.269

2 x DGL: D-GLUTAMIC ACID(Non-covalent)

DGL.2: 12 residues within 4Å: Chain A: D.31, S.32, P.62, Y.63, G.64, C.94, N.95, T.96, T.138, C.205, T.206, H.207 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:S.32, A:Y.63, A:G.64, A:N.95, A:T.96, A:T.96, A:T.206, A:T.206, A:T.206 Water bridges: A:S.32, A:T.141 DGL.4: 13 residues within 4Å: Chain B: D.31, S.32, P.62, Y.63, G.64, C.94, N.95, T.96, T.138, V.169, C.205, T.206, H.207 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:V.169 Hydrogen bonds: B:S.32, B:Y.63, B:G.64, B:N.95, B:T.96, B:T.206, B:T.206, B:T.206

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Geng, B. et al., Exploring 9-Benzyl Purines as Inhibitors of Glutamate Racemase (Muri) in Gram-Positive Bacteria. Bioorg.Med.Chem.Lett. (2008)

Release Date

2008-06-24

Peptides

GLUTAMATE RACEMASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

GLUTAMATE RACEMASE