SMTL ID : 2w0c.1 (1 other biounit)

X-ray structure of the entire lipid-containing bacteriophage PM2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 7.00 Å

Oligo State

hetero-10-1-4-1-mer

Ligands

11 x CA: CALCIUM ION(Non-covalent)

CA.1: 7 residues within 4Å: Chain A: M.103, F.104, A.105, P.141, S.142, W.143, L.144 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:A.105, A:P.141, A:W.143 CA.2: 7 residues within 4Å: Chain B: M.103, F.104, A.105, P.141, S.142, W.143, L.144 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:M.103, B:A.105, B:P.141, B:W.143 CA.3: 8 residues within 4Å: Chain C: M.103, F.104, A.105, P.141, S.142, W.143, L.144 Chain M: W.30 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:M.103, C:A.105, C:P.141, C:W.143 CA.4: 7 residues within 4Å: Chain D: M.103, F.104, A.105, P.141, S.142, W.143, L.144 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:M.103, D:A.105, D:P.141, D:W.143 CA.5: 8 residues within 4Å: Chain E: M.103, F.104, A.105, P.141, S.142, W.143, L.144 Chain N: W.30 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:A.105, E:P.141, E:W.143 CA.6: 7 residues within 4Å: Chain F: M.103, F.104, A.105, P.141, S.142, W.143, L.144 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:M.103, F:A.105, F:P.141, F:W.143 CA.7: 8 residues within 4Å: Chain G: M.103, F.104, A.105, P.141, S.142, W.143, L.144 Chain L: W.30 3 PLIP interactions: 3 interactions with chain G Metal complexes: G:A.105, G:P.141, G:W.143 CA.8: 7 residues within 4Å: Chain H: M.103, F.104, A.105, P.141, S.142, W.143, L.144 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:M.103, H:A.105, H:P.141, H:W.143 CA.9: 8 residues within 4Å: Chain I: M.103, F.104, A.105, P.141, S.142, W.143, L.144 Chain O: W.30 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:M.103, I:A.105, I:P.141, I:W.143 CA.10: 7 residues within 4Å: Chain J: M.103, F.104, A.105, P.141, S.142, W.143, L.144 3 PLIP interactions: 3 interactions with chain J Metal complexes: J:A.105, J:P.141, J:W.143 CA.11: 3 residues within 4Å: Chain K: S.231, D.293, D.295 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:S.231, K:D.293, K:D.293, K:D.295

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abrescia, N.G.A. et al., Insights Into Virus Evolution and Membrane Biogenesis from the Structure of the Marine Lipid-Containing Bacteriophage Pm2. Mol.Cell (2008)

Release Date

2008-09-23

Peptides

MAJOR CAPSID PROTEIN P2: ABCDEFGHIJ
PROTEIN 2: K
PROTEIN P3: LMNO
PROTEIN P6: P

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
L

L
P

M
Q

N
R

O
S

P
T

MAJOR CAPSID PROTEIN P2

PROTEIN 2

PROTEIN P3

PROTEIN P6

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