SMTL ID : 2w3t.1

Chloro complex of the Ni-Form of E.coli deformylase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.69 Å

Oligo State

monomer

Ligands

1 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 5 residues within 4Å: Chain A: Q.50, C.90, H.132, H.136 Ligands: CL.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.90, A:H.132, A:H.136, H2O.6

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 9 residues within 4Å: Chain A: G.45, Q.50, C.90, L.91, H.132, E.133, H.136 Ligands: NI.1, EOH.3 Ligand excluded by PLIP

1 x EOH: ETHANOL(Non-functional Binders)

EOH.3: 7 residues within 4Å: Chain A: G.43, I.44, G.45, G.89, C.90, L.91 Ligands: CL.2 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.91 Hydrogen bonds: A:I.44, A:G.45 Water bridges: A:L.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yen, N.T.H. et al., Structure of the Ni(II) Complex of Escherichia Coli Peptide Deformylase and Suggestions on Deformylase Activities Depending on Different Metal(II) Centres. J.Biol.Inorg.Chem. (2010)

Release Date

2009-12-15

Peptides

PEPTIDE DEFORMYLASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PEPTIDE DEFORMYLASE

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