SMTL ID : 2wdw.1

The Native Crystal Structure of the Primary Hexose Oxidase (Dbv29) in Antibiotic A40926 Biosynthesis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.21 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)(Covalent)

FAD.1: 28 residues within 4Å: Chain A: V.86, R.87, S.88, G.89, G.90, H.91, C.92, F.93, F.96, V.97, P.127, G.149, V.150, C.151, V.154, G.155, G.157, G.158, H.159, G.164, Y.165, G.218, G.219, G.222, V.224, Y.470, N.472, Y.473 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:H.91, A:F.93, A:F.93, A:V.154 Hydrogen bonds: A:V.86, A:V.86, A:S.88, A:G.89, A:G.90, A:H.91, A:C.92, A:V.150, A:C.151, A:G.155, A:G.155, A:G.158, A:H.159, A:Y.165, A:Y.165, A:G.219, A:V.224, A:V.224, A:Y.470, A:N.472, A:N.472, A:Y.473 FAD.2: 28 residues within 4Å: Chain B: V.86, R.87, S.88, G.89, G.90, H.91, C.92, F.93, F.96, V.97, M.108, P.127, G.149, V.150, C.151, V.154, G.155, G.157, G.158, H.159, G.164, Y.165, G.218, G.219, V.224, Y.470, N.472, Y.473 22 PLIP interactions: 22 interactions with chain B Hydrophobic interactions: B:H.91, B:F.93, B:V.154 Hydrogen bonds: B:V.86, B:V.86, B:S.88, B:G.89, B:G.90, B:H.91, B:C.92, B:V.150, B:G.155, B:G.155, B:G.158, B:Y.165, B:Y.165, B:G.219, B:V.224, B:V.224, B:N.472, B:N.472, B:H.517

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Y.-C. et al., Interception of Teicoplanin Oxidation Intermediates Yields New Antimicrobial Scaffolds. Nat.Chem.Biol. (2011)

Release Date

2010-04-07

Peptides

PUTATIVE HEXOSE OXIDASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PUTATIVE HEXOSE OXIDASE

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