SMTL ID : 2wj8.1 (1 other biounit)

Respiratory Syncitial Virus RiboNucleoProtein

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.29 Å

Oligo State

homo-10-mer

Ligands

10 x C- C- C- C- C- C- C: RNA (5'-R(*CP*CP*CP*CP*CP*C)-3')(Non-covalent)

C-C-C-C-C-C-C.1: 30 residues within 4Å: Chain A: K.170, A.172, A.173, A.181, R.184, R.185, N.249, G.254, Q.255, V.256, W.260, H.302, S.310, S.313, T.315, I.333, G.335, E.336, Y.337, R.338, R.342 Chain J: R.185, N.188, V.189, G.241, I.242, G.245, N.249 Ligands: C-C-C-C-C-C-C.2, C-C-C-C-C-C-C.10 Protein-ligand interaction information (PLIP) not available C-C-C-C-C-C-C.2: 29 residues within 4Å: Chain A: R.185, N.188, V.189, I.242, G.245, N.249 Chain B: K.170, A.172, A.173, A.181, R.184, R.185, N.249, G.254, Q.255, V.256, W.260, H.302, S.310, S.313, T.315, I.333, G.335, E.336, Y.337, R.338, R.342 Ligands: C-C-C-C-C-C-C.1, C-C-C-C-C-C-C.3 Protein-ligand interaction information (PLIP) not available C-C-C-C-C-C-C.3: 30 residues within 4Å: Chain B: R.185, N.188, V.189, I.242, G.245, N.249 Chain C: K.170, A.172, A.173, A.181, R.184, R.185, N.249, G.254, Q.255, V.256, W.260, H.302, S.310, S.313, T.315, I.333, G.335, E.336, Y.337, R.338, R.342 Ligands: C-C-C-C-C-C-C.2, C-C-C-C-C-C-C.4, C-C-C-C-C-C-C.4 Protein-ligand interaction information (PLIP) not available C-C-C-C-C-C-C.4: 30 residues within 4Å: Chain C: R.185, N.188, V.189, G.241, I.242, G.245, N.249 Chain D: K.170, A.172, A.173, A.181, R.184, R.185, N.249, G.254, Q.255, V.256, W.260, H.302, S.310, S.313, T.315, I.333, G.335, E.336, Y.337, R.338, R.342 Ligands: C-C-C-C-C-C-C.3, C-C-C-C-C-C-C.5 Protein-ligand interaction information (PLIP) not available C-C-C-C-C-C-C.5: 30 residues within 4Å: Chain D: R.185, N.188, V.189, G.241, I.242, G.245, N.249 Chain E: K.170, A.172, A.173, A.181, R.184, R.185, N.249, G.254, Q.255, V.256, W.260, H.302, S.310, S.313, T.315, I.333, G.335, E.336, Y.337, R.338, R.342 Ligands: C-C-C-C-C-C-C.4, C-C-C-C-C-C-C.6 Protein-ligand interaction information (PLIP) not available C-C-C-C-C-C-C.6: 31 residues within 4Å: Chain E: R.185, N.188, V.189, G.241, I.242, G.245, N.249 Chain F: K.170, A.172, A.173, A.181, R.184, R.185, N.249, G.254, Q.255, V.256, W.260, H.302, S.310, S.313, T.315, I.333, G.335, E.336, Y.337, R.338, R.342 Ligands: C-C-C-C-C-C-C.5, C-C-C-C-C-C-C.7, C-C-C-C-C-C-C.7 Protein-ligand interaction information (PLIP) not available C-C-C-C-C-C-C.7: 29 residues within 4Å: Chain F: R.185, N.188, V.189, I.242, G.245, N.249 Chain G: K.170, A.172, A.173, A.181, R.184, R.185, N.249, G.254, Q.255, V.256, W.260, H.302, S.310, S.313, T.315, I.333, G.335, E.336, Y.337, R.338, R.342 Ligands: C-C-C-C-C-C-C.6, C-C-C-C-C-C-C.8 Protein-ligand interaction information (PLIP) not available C-C-C-C-C-C-C.8: 29 residues within 4Å: Chain G: R.185, N.188, V.189, I.242, G.245, N.249 Chain H: K.170, A.172, A.173, A.181, R.184, R.185, N.249, G.254, Q.255, V.256, W.260, H.302, S.310, S.313, T.315, I.333, G.335, E.336, Y.337, R.338, R.342 Ligands: C-C-C-C-C-C-C.7, C-C-C-C-C-C-C.9 Protein-ligand interaction information (PLIP) not available C-C-C-C-C-C-C.9: 30 residues within 4Å: Chain H: R.185, N.188, V.189, I.242, G.245, N.249 Chain I: K.170, A.172, A.173, A.181, R.184, R.185, N.249, G.254, Q.255, V.256, W.260, H.302, S.310, S.313, T.315, I.333, G.335, E.336, Y.337, R.338, R.342 Ligands: C-C-C-C-C-C-C.8, C-C-C-C-C-C-C.10, C-C-C-C-C-C-C.10 Protein-ligand interaction information (PLIP) not available C-C-C-C-C-C-C.10: 31 residues within 4Å: Chain I: R.185, N.188, V.189, G.241, I.242, G.245, N.249 Chain J: K.170, A.172, A.173, A.181, R.184, R.185, N.249, G.254, Q.255, V.256, W.260, H.302, S.310, S.313, T.315, I.333, G.335, E.336, Y.337, R.338, R.342 Ligands: C-C-C-C-C-C-C.1, C-C-C-C-C-C-C.1, C-C-C-C-C-C-C.9 Protein-ligand interaction information (PLIP) not available

6 x BO4: BORATE ION(Non-covalent)

BO4.11: 3 residues within 4Å: Chain A: N.93, G.94, T.115 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.93, A:G.94 BO4.12: 3 residues within 4Å: Chain B: N.93, G.94, T.115 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.93, B:G.94 BO4.13: 3 residues within 4Å: Chain C: N.93, G.94, T.115 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.93, C:G.94 BO4.14: 3 residues within 4Å: Chain D: N.93, G.94, T.115 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:N.93, D:G.94 BO4.15: 3 residues within 4Å: Chain E: N.93, G.94, T.115 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:N.93, E:G.94 BO4.16: 3 residues within 4Å: Chain J: N.93, G.94, T.115 2 PLIP interactions: 2 interactions with chain J Hydrogen bonds: J:N.93, J:G.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tawar, R.G. et al., Crystal Structure of a Nucleocapsid-Like Nucleoprotein-RNA Complex of Respiratory Syncytial Virus. Science (2009)

Release Date

2009-12-08

Peptides

NUCLEOPROTEIN: ABCDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
K

B
L

C
M

D
N

E
O

F
P

G
Q

H
R

I
S

J
T

NUCLEOPROTEIN

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