SMTL ID : 2wn7.1

Structural Basis for Substrate Recognition in the Enzymatic Component of ADP-ribosyltransferase Toxin CDTa from Clostridium difficile

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

1 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 13 residues within 4Å: Chain A: Y.301, R.345, R.346, G.348, Q.350, E.351, Y.383, N.385, S.388, T.389, F.399, R.402, E.430 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:F.399 Hydrogen bonds: A:Y.301, A:R.346, A:R.346, A:G.348, A:Q.350, A:E.351, A:N.385, A:N.385, A:S.388, A:R.402 Water bridges: A:N.305, A:R.345, A:S.388, A:S.388, A:E.430 Salt bridges: A:R.345, A:R.345, A:R.402

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: R.106, Y.123, R.127, K.264, D.265 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.106, A:R.127, A:E.230 Water bridges: A:D.265

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sundriyal, A. et al., Structural Basis for Substrate Recognition in the Enzymatic Component of Adp-Ribosyltransferase Toxin Cdta from Clostridium Difficile. J.Biol.Chem. (2009)

Release Date

2009-08-18

Peptides

ADP-RIBOSYLTRANSFERASE ENZYMATIC COMPONENT: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ADP-RIBOSYLTRANSFERASE ENZYMATIC COMPONENT

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