SMTL ID : 2wr0.1

Structures of influenza H2 Hemagglutinins

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

homo-trimer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-NAG.1: 3 residues within 4Å: Chain B: N.179, W.250, V.252 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA- BMA: beta-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-NAG-BMA-BMA.2: 4 residues within 4Å: Chain B: E.487, N.490, N.494, T.496 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-NAG-BMA-MAN.3: 5 residues within 4Å: Chain C: E.487, N.490, S.491, N.494, T.496 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.4: 4 residues within 4Å: Chain A: E.487, N.490, S.491, N.494 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:N.490 Hydrogen bonds: A:E.487, A:E.487, A:N.494, A:T.496 Water bridges: A:E.487 NAG.5: 3 residues within 4Å: Chain A: N.179, W.250, V.252 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.179 NAG.6: 3 residues within 4Å: Chain C: N.179, W.250, V.252 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:V.252 Hydrogen bonds: C:N.179, C:W.250

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, J. et al., From the Cover: Structures of Receptor Complexes Formed by Hemagglutinins from the Asian Influenza Pandemic of 1957. Proc.Natl.Acad.Sci.USA (2009)

Release Date

2009-09-29

Peptides

HEMAGGLUTININ: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

HEMAGGLUTININ

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