SMTL ID : 2wrs.1 (1 other biounit)

Crystal Structure of the Mono-Zinc Metallo-beta-lactamase VIM-4 from Pseudomonas aeruginosa

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.79 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.83, H.85, D.87, H.148 Ligands: FLC.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.83, A:H.85, A:H.148

1 x FLC: CITRATE ANION(Non-covalent)

FLC.2: 12 residues within 4Å: Chain A: F.31, W.56, H.83, D.87, R.88, H.148, C.167, R.174, G.178, N.179, H.209 Ligands: ZN.1 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:F.31, A:W.56 Hydrogen bonds: A:D.87, A:N.179, A:N.179 Water bridges: A:C.167, A:H.209 Salt bridges: A:H.83, A:H.85, A:R.88, A:H.148, A:H.148, A:R.174, A:H.209, A:H.209

2 x CIT: CITRIC ACID(Non-functional Binders)

CIT.3: 4 residues within 4Å: Chain A: R.78, R.135, F.136, G.137 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.136 Hydrogen bonds: A:G.137 Salt bridges: A:R.78 CIT.4: 7 residues within 4Å: Chain A: R.96, G.99, V.100, A.101, T.102, T.121, H.122 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.101 Hydrogen bonds: A:V.100, A:T.102 Salt bridges: A:H.122

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lassaux, P. et al., Mercaptophosphonate Compounds as Broad-Spectrum Inhibitors of the Metallo-Beta-Lactamases. J.Med.Chem. (2010)

Release Date

2010-06-23

Peptides

BETA-LACTAMASE VIM-4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

BETA-LACTAMASE VIM-4

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