SMTL ID : 2wsp.2 (1 other biounit)

Thermotoga maritima alpha-L-fucosynthase, TmD224G, in complex with alpha-L-Fuc-(1-2)-beta-L-Fuc-N3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

homo-trimer

Ligands

3 x FUY- FUC: alpha-L-fucopyranose-(1-2)-beta-L-fucosyl-azide(Non-covalent)

FUY-FUC.1: 12 residues within 4Å: Chain A: H.34, W.58, N.62, Y.64, E.66, W.67, H.128, H.129, Y.171, R.254, E.266, F.290 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.290 Hydrogen bonds: A:E.66, A:W.67, A:H.128, A:R.254, A:W.58, A:N.62, A:R.254, A:E.266 FUY-FUC.2: 12 residues within 4Å: Chain B: H.34, W.58, N.62, Y.64, E.66, W.67, H.128, H.129, Y.171, R.254, E.266, F.290 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:F.290 Hydrogen bonds: B:E.66, B:W.67, B:H.128, B:R.254, B:N.62, B:W.67, B:R.254, B:E.266 FUY-FUC.3: 12 residues within 4Å: Chain C: H.34, W.58, N.62, Y.64, E.66, W.67, H.128, H.129, Y.171, R.254, E.266, F.290 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:F.290 Hydrogen bonds: C:E.66, C:W.67, C:H.128, C:R.254, C:W.58, C:N.62, C:R.254, C:E.266

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cobucci-Ponzano, B. et al., Beta-Glycosyl Azides as Substrates for Alpha-Glycosynthases: Preparation of Novel Efficient Alpha-L-Fucosynthases. Chem.Biol. (2009)

Release Date

2010-01-19

Peptides

ALPHA-L-FUCOSIDASE, PUTATIVE: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

C
B

ALPHA-L-FUCOSIDASE, PUTATIVE

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