SMTL ID : 2wtv.2 (3 other biounits)

Aurora-A Inhibitor Structure

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x ZZL: 4-{[9-CHLORO-7-(2,6-DIFLUOROPHENYL)-5H-PYRIMIDO[5,4-D][2]BENZAZEPIN-2-YL]AMINO}BENZOIC ACID(Non-covalent)

ZZL.1: 22 residues within 4Å: Chain A: L.21, G.22, K.23, G.24, V.29, A.42, K.44, L.76, E.93, Y.94, A.95, P.96, G.98, E.142, N.143, L.145, A.155, D.156, F.157, G.158, V.161 Ligands: ACT.4 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.21, A:V.29, A:V.29, A:A.42, A:Y.94, A:L.145, A:A.155, A:V.161 Hydrogen bonds: A:A.95, A:A.95 Water bridges: A:Y.94, A:K.102

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 2 residues within 4Å: Chain A: R.19, P.20 No protein-ligand interaction detected (PLIP)

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 6 residues within 4Å: Chain A: D.138, K.140, C.172, G.173, T.174, L.178 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.174 Water bridges: A:K.140, A:K.140 Salt bridges: A:K.140 ACT.4: 4 residues within 4Å: Chain A: E.99, K.102, V.161 Ligands: ZZL.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.161 Water bridges: A:K.102, A:K.102 Salt bridges: A:K.102 ACT.11: 5 residues within 4Å: Chain A: H.130, E.190, K.191, M.255, L.256 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:E.190 Hydrogen bonds: A:L.256 Water bridges: A:R.257 Salt bridges: A:H.130, A:K.191

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 3 residues within 4Å: Chain A: G.18, L.31 Ligands: EDO.10 No protein-ligand interaction detected (PLIP) EDO.6: 5 residues within 4Å: Chain A: E.52, G.55, V.56, E.57, H.58 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.55, A:E.57, A:E.57, A:H.58 EDO.7: 2 residues within 4Å: Chain A: R.61, H.83 No protein-ligand interaction detected (PLIP) EDO.8: 4 residues within 4Å: Chain A: D.84, A.85, T.86, R.87 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.85, A:T.86, A:T.86, A:R.87 EDO.9: 4 residues within 4Å: Chain A: K.25, H.162, A.163, T.169 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.162, A:A.163 EDO.10: 3 residues within 4Å: Chain A: G.18, R.19 Ligands: EDO.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.19, A:R.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dodson, C.A. et al., Crystal Structure of an Aurora-A Mutant that Mimics Aurora-B Bound to Mln8054: Insights Into Selectivity and Drug Design. Biochem.J. (2010)

Release Date

2010-01-26

Peptides

SERINE/THREONINE-PROTEIN KINASE 6 AURORA/IPL1-RELATED KINASE 1, BREAST TUMOR-AMPLIFIED KINASE, AURORA-A, AURORA-RELATED KINASE 1, HARK1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

SERINE/THREONINE-PROTEIN KINASE 6 AURORA/IPL1-RELATED KINASE 1, BREAST TUMOR-AMPLIFIED KINASE, AURORA-A, AURORA-RELATED KINASE 1, HARK1

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