SMTL ID : 2wvu.4 (3 other biounits)

Crystal structure of a Michaelis complex of alpha-L-fucosidase GH29 from Bacteroides thetaiotaomicron with the synthetic substrate 4- nitrophenyl-alpha-L-fucose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: W.202, R.232, R.241, H.242 Ligands: JFZ.4 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.232, A:R.241, A:H.242 SO4.2: 6 residues within 4Å: Chain A: S.173, L.176, E.177, D.180, W.211, W.212 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.173 Water bridges: A:D.180, A:D.180 SO4.3: 3 residues within 4Å: Chain A: K.50, Y.52, G.53 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.53 Water bridges: A:G.54 Salt bridges: A:K.50

1 x JFZ: 4-nitrophenyl 6-deoxy-alpha-L-galactopyranoside(Non-covalent)

JFZ.4: 14 residues within 4Å: Chain A: H.36, E.57, W.58, H.105, H.106, Y.148, W.197, D.199, W.202, R.232, E.258, R.259, W.286 Ligands: SO4.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:W.197, A:W.202, A:E.258, A:W.286 Hydrogen bonds: A:H.105, A:Y.148, A:D.199 Water bridges: A:N.284

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lammerts Van Bueren, A. et al., Analysis of the Reaction Coordinate of Alpha-L-Fucosidases: A Combined Structural and Quantum Mechanical Approach. J.Am.Chem.Soc. (2010)

Release Date

2010-02-02

Peptides

ALPHA-L-FUCOSIDASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

ALPHA-L-FUCOSIDASE

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