SMTL ID : 2wy6.1 (2 other biounits)

Clostridium perfringens alpha-toxin strain NCTC8237 mutant T74I

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: W.1, H.11, H.126, D.130 Ligands: CD.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:W.1, A:H.11, A:D.130

3 x CD: CADMIUM ION(Non-covalent)

CD.2: 5 residues within 4Å: Chain A: D.56, H.68, H.126, D.130 Ligands: ZN.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.56, A:H.68, A:H.126, A:D.130 CD.3: 3 residues within 4Å: Chain A: H.136, H.148, E.152 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.136, A:H.148, A:E.152, A:E.152 CD.4: 1 residues within 4Å: Chain A: D.215 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.215

1 x CA: CALCIUM ION(Non-covalent)

CA.5: 3 residues within 4Å: Chain A: D.293, N.294, P.295 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.293

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 3 residues within 4Å: Chain A: H.207, D.216, Y.219 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.216, A:Y.219

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vachieri, S.G. et al., Comparison of a Nontoxic Variant of Clostridium Perfringens [Alpha]-Toxin with the Toxic Wild-Type Strain. Acta Crystallogr.,Sect.D (2011)

Release Date

2009-11-24

Peptides

PHOSPHOLIPASE C: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PHOSPHOLIPASE C

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