SMTL ID : 2wye.1

The quorum quenching N-acyl homoserine lactone acylase PvdQ is an Ntn- Hydrolase with an unusual substrate-binding pocket

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-mer

Ligands

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: E.70, L.71, D.72, D.157 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.72, A:D.157 Water bridges: A:D.157, A:D.157 GOL.2: 6 residues within 4Å: Chain A: W.82, L.83, Q.85, A.88, R.144 Chain B: Q.125 5 PLIP interactions: 1 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:Q.125, A:L.83, A:R.144, A:R.144 Water bridges: A:Q.85 GOL.3: 4 residues within 4Å: Chain A: W.93, T.136, D.137, L.140 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.136, A:D.137 Water bridges: A:Q.94, A:D.137 GOL.4: 5 residues within 4Å: Chain A: E.149, G.150, Q.154 Chain B: V.70, W.186 2 PLIP interactions: 2 interactions with chain B Water bridges: B:D.71, B:D.71 GOL.5: 5 residues within 4Å: Chain B: L.43, D.44, N.166, Q.167, A.168 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.44, B:N.166 Water bridges: B:R.62 GOL.6: 7 residues within 4Å: Chain B: F.380, A.381, L.383, D.384, G.385, A.386, W.387 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:A.381, B:L.383, B:A.386, B:W.387 GOL.7: 1 residues within 4Å: Chain B: P.40 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bokhove, M. et al., The Quorum-Quenching N-Acyl Homoserine Lactone Acylase Pvdq is an Ntn-Hydrolase with an Unusual Substrate-Binding Pocket. Proc.Natl.Acad.Sci.USA (2010)

Release Date

2009-12-29

Peptides

ACYL-HOMOSERINE LACTONE ACYLASE PVDQ SUBUNIT ALPHA: A
ACYL-HOMOSERINE LACTONE ACYLASE PVDQ SUBUNIT BETA: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ACYL-HOMOSERINE LACTONE ACYLASE PVDQ SUBUNIT ALPHA

ACYL-HOMOSERINE LACTONE ACYLASE PVDQ SUBUNIT BETA

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