SMTL ID : 2wz0.1

L38V SOD1 mutant complexed with aniline.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.72 Å

Oligo State

homo-dimer

Ligands

2 x CU: COPPER (II) ION(Non-covalent)

CU.1: 6 residues within 4Å: Chain A: H.46, H.48, H.63, V.118, H.120 Ligands: ZN.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.46, A:H.48, A:H.120 CU.7: 5 residues within 4Å: Chain B: H.46, H.48, H.63, V.118, H.120 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.46, B:H.48, B:H.120

3 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: H.46, H.48, H.63, H.120 Ligands: CU.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.46, A:H.48, A:H.63, A:H.120, H2O.5 ZN.3: 5 residues within 4Å: Chain A: H.63, H.71, H.80, D.83, K.136 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.63, A:H.71, A:H.80, A:D.83, A:D.83 ZN.8: 5 residues within 4Å: Chain B: H.63, H.71, H.80, D.83, K.136 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:H.63, B:H.71, B:H.80, B:D.83, B:D.83

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 3 residues within 4Å: Chain A: T.58, S.142, R.143 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.143 Water bridges: A:G.141, A:G.141, A:R.143, A:R.143 SO4.5: 4 residues within 4Å: Chain B: T.137, N.139, A.140, G.141 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:N.139, B:N.139, B:A.140, B:G.141 Water bridges: B:G.141, B:G.141

2 x ZZT: 2-METHOXY-5-METHYLANILINE(Non-covalent)

ZZT.6: 2 residues within 4Å: Chain A: W.32, S.98 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.98 Water bridges: A:I.99 pi-Stacking: A:W.32 ZZT.11: 5 residues within 4Å: Chain B: K.30, V.31, W.32, S.98, I.99 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:K.30, B:W.32, B:W.32 Hydrogen bonds: B:S.98 pi-Stacking: B:W.32, B:W.32

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.9: 6 residues within 4Å: Chain B: G.10, D.11, C.57, R.143, L.144 Ligands: DSN.10 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.11 Salt bridges: B:D.11

1 x DSN: D-SERINE(Non-covalent)

DSN.10: 6 residues within 4Å: Chain B: A.55, G.56, C.57, T.58, R.143 Ligands: DMS.9 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:C.57, B:T.58, B:R.143 Water bridges: B:R.143

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Antonyuk, S. et al., Structural Discovery of Small Molecule Binding Sites in Cu-Zn Human Superoxide Dismutase Familial Amyotrophic Lateral Sclerosis Mutants Provides Insights for Lead Optimization. J.Med.Chem. (2010)

Release Date

2010-12-08

Peptides

SUPEROXIDE DISMUTASE [CU-ZN]: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
F

SUPEROXIDE DISMUTASE [CU-ZN]

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