SMTL ID : 2x0f.1

Structure of WsaF in complex with dTDP-beta-L-Rha

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

homo-dimer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 2 residues within 4Å: Chain A: Y.220, F.221 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.221 GOL.2: 8 residues within 4Å: Chain A: F.172, Y.183, Y.208, K.212 Chain B: F.172, Y.183, K.212 Ligands: GOL.5 7 PLIP interactions: 4 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:Y.183, A:Y.183, B:Y.183 Water bridges: A:Y.208, A:Y.346, B:Y.208, B:K.212 GOL.4: 8 residues within 4Å: Chain A: G.175, F.176, S.251, V.252, K.253, R.254 Chain B: Q.178, W.179 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.251, A:K.253, A:R.254, A:R.254, B:W.179 GOL.5: 12 residues within 4Å: Chain A: G.175, Y.177, Q.178, W.179, Y.183 Chain B: P.174, G.175, Y.177, Q.178, W.179, Y.183 Ligands: GOL.2 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Y.177, A:W.179, B:W.179

2 x TRH: 2'-DEOXY-THYMIDINE-BETA-L-RHAMNOSE(Non-covalent)

TRH.3: 15 residues within 4Å: Chain A: G.63, S.66, T.67, K.225, I.226, N.227, Y.247, V.282, G.283, K.302, L.303, L.305, Y.308, Y.329, E.333 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:Y.247, A:V.282, A:L.305, A:Y.308, A:Y.308 Hydrogen bonds: A:G.63, A:S.66, A:S.66, A:T.67, A:K.225, A:N.227, A:G.283, A:L.303, A:L.303 Water bridges: A:K.225, A:N.227, A:R.249, A:R.249, A:R.249 Salt bridges: A:R.249 pi-Stacking: A:Y.308 TRH.6: 17 residues within 4Å: Chain B: F.62, G.63, S.66, K.225, I.226, N.227, Y.247, R.249, V.282, G.283, G.301, K.302, L.303, L.305, Y.308, Y.329, E.333 19 PLIP interactions: 19 interactions with chain B Hydrophobic interactions: B:Y.247, B:V.282, B:L.305, B:Y.308 Hydrogen bonds: B:G.63, B:S.66, B:S.66, B:K.225, B:N.227, B:Y.247, B:G.283, B:L.303, B:L.303 Water bridges: B:K.225, B:T.228, B:R.249, B:E.333 Salt bridges: B:R.249 pi-Stacking: B:Y.308

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Steiner, K. et al., Structural Basis of Substrate Binding in Wsaf, a Rhamnosyltransferase from Geobacillus Stearothermophilus. J.Mol.Biol. (2010)

Release Date

2010-02-02

Peptides

WSAF: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

WSAF

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