SMTL ID : 2x3k.1

CO-COMPLEX STRUCTURE OF ACHROMOBACTIN SYNTHETASE PROTEIN D (ACSD) WITH AMP AND SULFATE FROM PECTOBACTERIUM CHRYSANTHEMI

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

2 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 12 residues within 4Å: Chain A: L.166, G.169, H.170, P.171, I.300, T.301, R.305, H.444, L.445, Q.446, D.464, N.509 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.301, A:T.301, A:N.509, A:N.509 Salt bridges: A:R.305, A:H.444 pi-Stacking: A:H.170 AMP.3: 10 residues within 4Å: Chain B: L.166, H.170, P.171, T.301, R.305, H.444, L.445, Q.446, N.509 Ligands: SO4.4 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:L.445, B:N.509, B:N.509 Water bridges: B:H.170, B:H.173, B:R.281, B:E.466, B:E.466, B:E.466 Salt bridges: B:R.305 pi-Cation interactions: B:H.170

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 8 residues within 4Å: Chain A: S.279, R.281, T.282, K.293, R.369, Q.446, N.447, D.464 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.279, A:S.279, A:T.282, A:Q.446 Salt bridges: A:K.293, A:R.369 SO4.4: 8 residues within 4Å: Chain B: S.279, R.281, T.282, K.293, R.369, Q.446, D.464 Ligands: AMP.3 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:S.279, B:T.282, B:T.282, B:Q.446, B:D.464 Salt bridges: B:K.293, B:R.369

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schmelz, S., Adenylate Forming Enzymes Involved in Nrps-Independent Siderophore Biosynthesis. Ph D Thesis (2010)

Release Date

2010-11-10

Peptides

ACSD: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ACSD

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