SMTL ID : 2x6o.1

Tet Repressor class D in complex with 7-chlor-2-cyano-iso- tetracycline

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x 2TC: (4S,4AS,6S,8AS)-6-[(1S)-7-CHLORO-4-HYDROXY-1-METHYL-3-OXO-1,3-DIHYDRO-2-BENZOFURAN-1-YL]-4-(DIMETHYLAMINO)-3,8A-DIHYDROXY-1,8-DIOXO-1,4,4A,5,6,7,8,8A-OCTAHYDRONAPHTHALENE-2-CARBONITRILE(Non-covalent)

2TC.1: 13 residues within 4Å: Chain A: H.63, N.81, F.85, H.99, P.104, Q.108, Y.109, V.112, Q.115, I.133, S.137, H.138 Chain B: M.176 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.112, A:I.133 Hydrogen bonds: A:H.63, A:N.81, A:Q.108, A:Q.115 2TC.4: 13 residues within 4Å: Chain A: M.176 Chain B: H.63, N.81, F.85, H.99, P.104, Q.108, Y.109, V.112, Q.115, I.133, S.137, H.138 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:V.112, B:I.133 Hydrogen bonds: B:H.63, B:N.81, B:Q.108, B:Q.115

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: S.1, R.2 Ligand excluded by PLIP CL.3: 1 residues within 4Å: Chain A: L.3 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain B: S.1, R.2 Ligand excluded by PLIP CL.6: 1 residues within 4Å: Chain B: L.3 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Volkers, G. et al., Recognition of Drug Degradation Products by Target Proteins: Isotetracycline Binding to Tet Repressor. J.Med.Chem. (2011)

Release Date

2011-03-02

Peptides

TETRACYCLINE REPRESSOR PROTEIN CLASS D: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

TETRACYCLINE REPRESSOR PROTEIN CLASS D

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