SMTL ID : 2x6t.10 (9 other biounits)

AGME bound to ADP-B-mannose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.36 Å

Oligo State

monomer

Ligands

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 29 residues within 4Å: Chain A: T.52, G.53, G.56, F.57, I.58, V.77, D.78, N.79, K.85, K.100, E.122, G.123, A.124, C.125, S.126, Y.135, N.139, Y.143, A.161, S.162, S.163, F.187, K.191, Y.214, F.215, V.217, H.224, K.225 Ligands: BMA.4 29 PLIP interactions: 29 interactions with chain A Hydrophobic interactions: A:Y.214 Hydrogen bonds: A:G.53, A:F.57, A:I.58, A:N.79, A:K.100, A:E.122, A:A.124, A:S.126, A:Y.135, A:N.139, A:N.139, A:K.191, A:V.217 Water bridges: A:G.59, A:K.85, A:A.124, A:S.126, A:S.126, A:S.127, A:V.217, A:K.225 Salt bridges: A:K.85, A:K.100, A:H.224, A:K.225, A:K.225 pi-Stacking: A:Y.143, A:Y.214

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 10 residues within 4Å: Chain A: N.140, Y.141, S.144, Y.160, A.161, S.162, S.190, K.191, F.194, D.195 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.144, A:A.161, A:S.190, A:K.191, A:D.195, A:D.195

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.3: 16 residues within 4Å: Chain A: T.128, N.216, S.227, M.228, A.229, V.231, H.234, L.247, F.248, S.251, F.254, R.256, F.290, L.315, Y.319 Ligands: BMA.4 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:T.128, A:N.216, A:A.229, A:H.234, A:F.248, A:S.251, A:S.251, A:Y.319 Water bridges: A:T.128, A:R.256, A:R.256 Salt bridges: A:R.256, A:R.256 pi-Stacking: A:F.248, A:F.248

1 x BMA: beta-D-mannopyranose(Non-covalent)

BMA.4: 8 residues within 4Å: Chain A: S.126, S.163, A.165, F.187, K.225, M.228 Ligands: NAP.1, ADP.3 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.163, A:S.163, A:K.225, A:M.228 Water bridges: A:M.228, A:A.229

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kowatz, T. et al., The Crystal Structure of the Y140F Mutant of Adp-L-Glycero-D-Manno-Heptose 6-Epimerase Bound to Adp-Beta-D-Mannose Suggests a One Base Mechanism. Protein Sci. (2010)

Release Date

2010-03-02

Peptides

ADP-L-GLYCERO-D-MANNO-HEPTOSE-6-EPIMERASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
J

ADP-L-GLYCERO-D-MANNO-HEPTOSE-6-EPIMERASE

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