SMTL ID : 2x7w.1

Crystal structure of Thermotoga maritima endonuclease IV in the presence of cadmium and zinc

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.36 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: H.69, N.107, H.109, E.144, E.260 Ligands: CD.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.69, A:H.109, A:E.144, H2O.8

2 x CD: CADMIUM ION(Non-covalent)

CD.2: 6 residues within 4Å: Chain A: E.144, D.178, H.181, H.215, E.260 Ligands: ZN.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.144, A:D.178, A:H.215, A:E.260, H2O.8 CD.3: 4 residues within 4Å: Chain A: H.181, D.228, H.230 Ligands: BCN.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.181, A:D.228, A:H.230

1 x BCN: BICINE(Non-covalent)

BCN.4: 6 residues within 4Å: Chain A: H.109, H.181, D.228, R.229, H.230 Ligands: CD.3 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:H.230 Water bridges: A:N.152, A:N.152, A:H.230 Salt bridges: A:H.109, A:D.228, A:H.230

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tomanicek, S.J. et al., Structure of the Endonuclease Iv Homologue from Thermotoga Maritima in the Presence of Active-Site Divalent Metal Ions. Acta Crystallogr.,Sect.F (2010)

Release Date

2010-09-08

Peptides

PROBABLE ENDONUCLEASE 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PROBABLE ENDONUCLEASE 4

Related Entries With Identical Sequence