SMTL ID : 2x8p.1

Crystal Structure of CbpF in Complex with Atropine by Co- Crystallization

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.27 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: Y.244, R.246, S.247 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.244, A:S.247 Salt bridges: A:R.246

2 x OIN: (1R,5S)-8-METHYL-8-AZABICYCLO[3.2.1]OCT-3-YL (2R)-3-HYDROXY-2-PHENYLPROPANOATE(Non-covalent)

OIN.2: 5 residues within 4Å: Chain A: W.194, K.196, W.201, Y.222, S.248 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.201, A:W.201, A:W.201 pi-Cation interactions: A:W.201 OIN.4: 4 residues within 4Å: Chain A: W.163, W.181, K.227, N.228 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.181, A:N.228 Salt bridges: A:K.227 pi-Stacking: A:W.181

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: Y.203, G.205, S.206, S.207, K.215 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Y.203, A:Y.203, A:S.206, A:S.207, A:S.207 Water bridges: A:Y.203, A:S.206, A:K.215 GOL.5: 9 residues within 4Å: Chain A: Y.48, Q.72, E.73, K.74, K.142, L.143, Y.151, I.156, T.170 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.72, A:E.73, A:Y.151, A:T.170 Water bridges: A:E.73, A:K.74

5 x CHT: CHOLINE ION(Non-covalent)

CHT.6: 4 residues within 4Å: Chain A: W.276, W.283, Y.301, W.309 4 PLIP interactions: 4 interactions with chain A pi-Cation interactions: A:W.276, A:W.276, A:W.283, A:W.309 CHT.7: 2 residues within 4Å: Chain A: W.255, N.306 4 PLIP interactions: 4 interactions with chain A pi-Cation interactions: A:W.255, A:W.255, A:W.262, A:W.262 CHT.8: 5 residues within 4Å: Chain A: W.235, W.242, Y.263, M.272, S.289 4 PLIP interactions: 4 interactions with chain A pi-Cation interactions: A:W.235, A:W.235, A:W.242, A:W.242 CHT.9: 3 residues within 4Å: Chain A: W.214, W.221, N.269 4 PLIP interactions: 4 interactions with chain A pi-Cation interactions: A:W.214, A:W.214, A:W.221, A:W.221 CHT.10: 5 residues within 4Å: Chain A: W.130, W.137, Y.182, M.190, S.207 5 PLIP interactions: 5 interactions with chain A Water bridges: A:W.130, A:D.166 pi-Cation interactions: A:W.130, A:W.137, A:W.137

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Silva-Martin, N. et al., Crystal Structures of Cbpf Complexed with Atropine and Ipratropium Reveal Clues for the Design of Novel Antimicrobials Against Streptococcus Pneumoniae. Biochim.Biophys.Acta (2013)

Release Date

2011-04-06

Peptides

CHOLINE-BINDING PROTEIN F: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CHOLINE-BINDING PROTEIN F

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