SMTL ID : 2xaa.2 (2 other biounits)

Alcohol dehydrogenase ADH-'A' from Rhodococcus ruber DSM 44541 at pH 8.5 in complex with NAD and butane-1,4-diol

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 25 residues within 4Å: Chain A: H.39, S.40, D.153, T.157, G.179, V.180, G.181, G.182, L.183, D.203, L.204, R.208, S.223, F.246, V.247, T.252, V.269, G.270, I.271, P.293, Y.294, W.295, R.340 Chain B: F.281 Ligands: ZN.2 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:H.39, A:V.180, A:G.182, A:L.183, A:L.204, A:S.223, A:I.271, A:P.293, A:W.295, A:R.340 Water bridges: A:G.181, A:G.184 Salt bridges: A:H.39, A:R.340 NAD.4: 30 residues within 4Å: Chain A: F.281 Chain B: C.38, H.39, S.40, D.153, T.157, I.178, G.179, V.180, G.181, G.182, L.183, V.202, D.203, L.204, R.208, S.223, F.246, V.247, T.252, V.269, G.270, I.271, P.293, Y.294, W.295, L.332, R.340 Ligands: ZN.5, BU1.6 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:T.157, B:L.183 Hydrogen bonds: B:H.39, B:V.180, B:V.180, B:G.182, B:L.183, B:L.204, B:S.223, B:I.271, B:P.293, B:W.295 Water bridges: B:G.181, B:G.184, B:R.208 Salt bridges: B:H.39, B:R.340

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: C.38, S.40, H.62, D.153 Ligands: NAD.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.62, A:D.153 ZN.3: 5 residues within 4Å: Chain A: C.92, G.93, C.95, C.98, C.106 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.92, A:C.95, A:C.98, A:C.106 ZN.5: 6 residues within 4Å: Chain B: C.38, S.40, H.62, D.153 Ligands: NAD.4, BU1.6 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.38, B:H.62, B:D.153 ZN.7: 5 residues within 4Å: Chain B: C.92, G.93, C.95, C.98, C.106 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.92, B:C.95, B:C.98, B:C.106

1 x BU1: 1,4-BUTANEDIOL(Non-functional Binders)

BU1.6: 5 residues within 4Å: Chain B: S.40, H.62, D.153 Ligands: NAD.4, ZN.5 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.40

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Karabec, M. et al., Structural Insights Into Substrate Specificity and Solvent Tolerance in Alcohol Dehydrogenase Adh-'A' from Rhodococcus Ruber Dsm 44541. Chem.Commun.(Camb.) (2010)

Release Date

2010-08-11

Peptides

SECONDARY ALCOHOL DEHYDROGENASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

SECONDARY ALCOHOL DEHYDROGENASE

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