SMTL ID : 2xb2.2 (1 other biounit)

Crystal structure of the core Mago-Y14-eIF4AIII-Barentsz-UPF3b assembly shows how the EJC is bridged to the NMD machinery

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: T.89, D.187, E.188 Ligands: ANP.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:T.89, A:E.188

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.2: 24 residues within 4Å: Chain A: F.40, Y.56, F.58, E.59, K.60, P.61, S.62, Q.65, Q.83, S.84, G.85, T.86, G.87, K.88, T.89, A.90, E.188, G.340, D.342, P.344, R.367, R.370, Y.371 Ligands: MG.1 24 PLIP interactions: 24 interactions with chain A Hydrogen bonds: A:E.59, A:S.62, A:Q.65, A:Q.65, A:G.85, A:T.86, A:G.87, A:K.88, A:K.88, A:K.88, A:T.89, A:T.89, A:A.90, A:G.340, A:D.342, A:R.367, A:R.367, A:R.370, A:R.370, A:R.373 pi-Stacking: A:F.58, A:F.58, A:Y.371, A:Y.371

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Buchwald, G. et al., Insights Into the Recruitment of the Nmd Machinery from the Crystal Structure of a Core Ejc-Upf3B Complex. Proc.Natl.Acad.Sci.USA (2010)

Release Date

2010-05-12

Peptides

EUKARYOTIC INITIATION FACTOR 4A-III: A
PROTEIN MAGO NASHI HOMOLOG: B
RNA-BINDING PROTEIN 8A: C
REGULATOR OF NONSENSE TRANSCRIPTS 3B: E
PROTEIN CASC3: F

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
D

E
G

F
T

EUKARYOTIC INITIATION FACTOR 4A-III

PROTEIN MAGO NASHI HOMOLOG

RNA-BINDING PROTEIN 8A

REGULATOR OF NONSENSE TRANSCRIPTS 3B

PROTEIN CASC3

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