SMTL ID : 2xb8.1

Structure of Mycobacterium tuberculosis type II dehydroquinase in complex with inhibitor compound (2R)-2-(4-methoxybenzyl)-3- dehydroquinic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-12-mer

Ligands

12 x XNW: (1R,2R,4S,5R)-1,4,5-TRIHYDROXY-2-(4-METHOXYBENZYL)-3-OXOCYCLOHEXANECARBOXYLIC ACID(Non-covalent)

XNW.1: 16 residues within 4Å: Chain A: N.12, L.13, R.15, L.16, Y.24, N.75, G.77, G.78, H.81, H.101, I.102, S.103, V.105, R.112 Chain J: V.84, D.88 20 PLIP interactions: 19 interactions with chain A, 1 interactions with chain J Hydrophobic interactions: A:N.12, A:L.13, A:L.13, A:L.16, A:Y.24, A:Y.24, A:V.105 Hydrogen bonds: A:N.75, A:G.77, A:G.77, A:H.81, A:I.102, A:S.103, A:S.103, A:R.112, J:D.88 Water bridges: A:G.78, A:G.78 Salt bridges: A:H.101 pi-Stacking: A:Y.24 XNW.10: 16 residues within 4Å: Chain B: N.12, L.13, R.15, L.16, Y.24, N.75, G.77, G.78, H.81, H.101, I.102, S.103, V.105, R.112 Chain G: V.84, D.88 20 PLIP interactions: 2 interactions with chain G, 18 interactions with chain B Hydrogen bonds: G:D.88, B:N.75, B:G.77, B:G.77, B:H.81, B:I.102, B:S.103, B:S.103, B:R.112 Water bridges: G:D.88, B:G.78 Hydrophobic interactions: B:N.12, B:L.13, B:L.13, B:L.16, B:Y.24, B:Y.24, B:V.105 Salt bridges: B:H.101 pi-Stacking: B:Y.24 XNW.19: 16 residues within 4Å: Chain B: V.84, D.88 Chain C: N.12, L.13, R.15, L.16, Y.24, N.75, G.77, G.78, H.81, H.101, I.102, S.103, V.105, R.112 20 PLIP interactions: 19 interactions with chain C, 1 interactions with chain B Hydrophobic interactions: C:N.12, C:L.13, C:L.13, C:L.16, C:Y.24, C:Y.24, C:V.105 Hydrogen bonds: C:N.75, C:G.77, C:G.77, C:H.81, C:I.102, C:S.103, C:S.103, C:R.112, B:D.88 Water bridges: C:G.78, C:G.78 Salt bridges: C:H.101 pi-Stacking: C:Y.24 XNW.28: 16 residues within 4Å: Chain D: N.12, L.13, R.15, L.16, Y.24, N.75, G.77, G.78, H.81, H.101, I.102, S.103, V.105, R.112 Chain F: V.84, D.88 21 PLIP interactions: 19 interactions with chain D, 2 interactions with chain F Hydrophobic interactions: D:N.12, D:L.13, D:L.13, D:L.16, D:Y.24, D:Y.24, D:V.105 Hydrogen bonds: D:N.75, D:G.77, D:G.77, D:H.81, D:H.101, D:I.102, D:S.103, D:S.103, D:R.112, F:D.88 Water bridges: D:G.78, F:D.88 Salt bridges: D:H.101 pi-Stacking: D:Y.24 XNW.37: 16 residues within 4Å: Chain E: N.12, L.13, R.15, L.16, Y.24, N.75, G.77, G.78, H.81, H.101, I.102, S.103, V.105, R.112 Chain L: V.84, D.88 21 PLIP interactions: 19 interactions with chain E, 2 interactions with chain L Hydrophobic interactions: E:N.12, E:L.13, E:L.13, E:L.16, E:Y.24, E:Y.24, E:V.105 Hydrogen bonds: E:N.75, E:G.77, E:G.77, E:H.81, E:H.101, E:I.102, E:S.103, E:S.103, E:R.112, L:D.88 Water bridges: E:G.78, L:D.88 Salt bridges: E:H.101 pi-Stacking: E:Y.24 XNW.46: 16 residues within 4Å: Chain F: N.12, L.13, R.15, L.16, Y.24, N.75, G.77, G.78, H.81, H.101, I.102, S.103, V.105, R.112 Chain H: V.84, D.88 21 PLIP interactions: 20 interactions with chain F, 1 interactions with chain H Hydrophobic interactions: F:N.12, F:L.13, F:L.13, F:L.16, F:Y.24, F:Y.24, F:V.105 Hydrogen bonds: F:N.75, F:G.77, F:G.77, F:H.81, F:H.101, F:I.102, F:S.103, F:S.103, F:R.112, H:D.88 Water bridges: F:G.78, F:G.78 Salt bridges: F:H.101 pi-Stacking: F:Y.24 XNW.55: 16 residues within 4Å: Chain C: V.84, D.88 Chain G: N.12, L.13, R.15, L.16, Y.24, N.75, G.77, G.78, H.81, H.101, I.102, S.103, V.105, R.112 20 PLIP interactions: 19 interactions with chain G, 1 interactions with chain C Hydrophobic interactions: G:N.12, G:L.13, G:L.13, G:L.16, G:Y.24, G:Y.24, G:V.105 Hydrogen bonds: G:N.75, G:G.77, G:G.77, G:H.81, G:I.102, G:S.103, G:S.103, G:R.112, C:D.88 Water bridges: G:G.78, G:G.78 Salt bridges: G:H.101 pi-Stacking: G:Y.24 XNW.64: 16 residues within 4Å: Chain D: V.84, D.88 Chain H: N.12, L.13, R.15, L.16, Y.24, N.75, G.77, G.78, H.81, H.101, I.102, S.103, V.105, R.112 21 PLIP interactions: 19 interactions with chain H, 2 interactions with chain D Hydrophobic interactions: H:N.12, H:L.13, H:L.13, H:L.16, H:Y.24, H:Y.24, H:V.105 Hydrogen bonds: H:N.75, H:G.77, H:G.77, H:H.81, H:H.101, H:I.102, H:S.103, H:S.103, H:R.112, D:D.88 Water bridges: H:G.78, D:D.88 Salt bridges: H:H.101 pi-Stacking: H:Y.24 XNW.73: 16 residues within 4Å: Chain E: V.84, D.88 Chain I: N.12, L.13, R.15, L.16, Y.24, N.75, G.77, G.78, H.81, H.101, I.102, S.103, V.105, R.112 21 PLIP interactions: 19 interactions with chain I, 2 interactions with chain E Hydrophobic interactions: I:N.12, I:L.13, I:L.13, I:L.16, I:Y.24, I:Y.24, I:V.105 Hydrogen bonds: I:N.75, I:G.77, I:G.77, I:H.81, I:H.101, I:I.102, I:S.103, I:S.103, I:R.112, E:D.88 Water bridges: I:G.78, E:D.88 Salt bridges: I:H.101 pi-Stacking: I:Y.24 XNW.82: 16 residues within 4Å: Chain J: N.12, L.13, R.15, L.16, Y.24, N.75, G.77, G.78, H.81, H.101, I.102, S.103, V.105, R.112 Chain K: V.84, D.88 20 PLIP interactions: 19 interactions with chain J, 1 interactions with chain K Hydrophobic interactions: J:N.12, J:L.13, J:L.13, J:L.16, J:Y.24, J:Y.24, J:V.105 Hydrogen bonds: J:N.75, J:G.77, J:G.77, J:H.81, J:I.102, J:S.103, J:S.103, J:R.112, K:D.88 Water bridges: J:G.78, J:G.78 Salt bridges: J:H.101 pi-Stacking: J:Y.24 XNW.91: 16 residues within 4Å: Chain A: V.84, D.88 Chain K: N.12, L.13, R.15, L.16, Y.24, N.75, G.77, G.78, H.81, H.101, I.102, S.103, V.105, R.112 20 PLIP interactions: 18 interactions with chain K, 2 interactions with chain A Hydrophobic interactions: K:N.12, K:L.13, K:L.13, K:L.16, K:Y.24, K:Y.24, K:V.105 Hydrogen bonds: K:N.75, K:G.77, K:G.77, K:H.81, K:I.102, K:S.103, K:S.103, K:R.112, A:D.88 Water bridges: K:G.78, A:D.88 Salt bridges: K:H.101 pi-Stacking: K:Y.24 XNW.100: 16 residues within 4Å: Chain I: V.84, D.88 Chain L: N.12, L.13, R.15, L.16, Y.24, N.75, G.77, G.78, H.81, H.101, I.102, S.103, V.105, R.112 21 PLIP interactions: 20 interactions with chain L, 1 interactions with chain I Hydrophobic interactions: L:N.12, L:L.13, L:L.13, L:L.16, L:Y.24, L:Y.24, L:V.105 Hydrogen bonds: L:N.75, L:G.77, L:G.77, L:H.81, L:H.101, L:I.102, L:S.103, L:S.103, L:R.112, I:D.88 Water bridges: L:G.78, L:G.78 Salt bridges: L:H.101 pi-Stacking: L:Y.24

84 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 7 residues within 4Å: Chain A: S.54 Chain J: S.54, A.56 Chain K: S.54, A.56 Ligands: SO4.83, SO4.92 Ligand excluded by PLIP SO4.3: 5 residues within 4Å: Chain A: H.114, S.115, Y.116 Ligands: SO4.5, SO4.7 Ligand excluded by PLIP SO4.4: 3 residues within 4Å: Chain A: R.50, W.61, Q.64 Ligand excluded by PLIP SO4.5: 6 residues within 4Å: Chain A: H.114, S.115, P.119 Chain G: H.106, R.113 Ligands: SO4.3 Ligand excluded by PLIP SO4.6: 5 residues within 4Å: Chain A: R.15, R.18 Chain J: D.60, H.63, D.67 Ligand excluded by PLIP SO4.7: 6 residues within 4Å: Chain A: R.87, P.119 Chain G: R.113 Chain K: E.109, F.111 Ligands: SO4.3 Ligand excluded by PLIP SO4.8: 2 residues within 4Å: Chain A: V.48, R.50 Ligand excluded by PLIP SO4.11: 7 residues within 4Å: Chain B: S.54 Chain C: S.54, A.56 Chain G: S.54, A.56 Ligands: SO4.20, SO4.56 Ligand excluded by PLIP SO4.12: 5 residues within 4Å: Chain B: H.114, S.115, Y.116 Ligands: SO4.14, SO4.16 Ligand excluded by PLIP SO4.13: 3 residues within 4Å: Chain B: R.50, W.61, Q.64 Ligand excluded by PLIP SO4.14: 6 residues within 4Å: Chain B: H.114, S.115, P.119 Chain F: H.106, R.113 Ligands: SO4.12 Ligand excluded by PLIP SO4.15: 5 residues within 4Å: Chain B: R.15, R.18 Chain G: D.60, H.63, D.67 Ligand excluded by PLIP SO4.16: 6 residues within 4Å: Chain B: R.87, P.119 Chain C: E.109, F.111 Chain F: R.113 Ligands: SO4.12 Ligand excluded by PLIP SO4.17: 2 residues within 4Å: Chain B: V.48, R.50 Ligand excluded by PLIP SO4.20: 7 residues within 4Å: Chain B: S.54, A.56 Chain C: S.54 Chain G: S.54, A.56 Ligands: SO4.11, SO4.56 Ligand excluded by PLIP SO4.21: 5 residues within 4Å: Chain C: H.114, S.115, Y.116 Ligands: SO4.23, SO4.25 Ligand excluded by PLIP SO4.22: 3 residues within 4Å: Chain C: R.50, W.61, Q.64 Ligand excluded by PLIP SO4.23: 6 residues within 4Å: Chain C: H.114, S.115, P.119 Chain E: H.106, R.113 Ligands: SO4.21 Ligand excluded by PLIP SO4.24: 5 residues within 4Å: Chain B: D.60, H.63, D.67 Chain C: R.15, R.18 Ligand excluded by PLIP SO4.25: 6 residues within 4Å: Chain C: R.87, P.119 Chain E: R.113 Chain G: E.109, F.111 Ligands: SO4.21 Ligand excluded by PLIP SO4.26: 2 residues within 4Å: Chain C: V.48, R.50 Ligand excluded by PLIP SO4.29: 7 residues within 4Å: Chain D: S.54 Chain F: S.54, A.56 Chain H: S.54, A.56 Ligands: SO4.47, SO4.65 Ligand excluded by PLIP SO4.30: 5 residues within 4Å: Chain D: H.114, S.115, Y.116 Ligands: SO4.32, SO4.34 Ligand excluded by PLIP SO4.31: 3 residues within 4Å: Chain D: R.50, W.61, Q.64 Ligand excluded by PLIP SO4.32: 6 residues within 4Å: Chain D: H.114, S.115, P.119 Chain J: H.106, R.113 Ligands: SO4.30 Ligand excluded by PLIP SO4.33: 5 residues within 4Å: Chain D: R.15, R.18 Chain F: D.60, H.63, D.67 Ligand excluded by PLIP SO4.34: 6 residues within 4Å: Chain D: R.87, P.119 Chain H: E.109, F.111 Chain J: R.113 Ligands: SO4.30 Ligand excluded by PLIP SO4.35: 2 residues within 4Å: Chain D: V.48, R.50 Ligand excluded by PLIP SO4.38: 7 residues within 4Å: Chain E: S.54 Chain I: S.54, A.56 Chain L: S.54, A.56 Ligands: SO4.74, SO4.101 Ligand excluded by PLIP SO4.39: 5 residues within 4Å: Chain E: H.114, S.115, Y.116 Ligands: SO4.41, SO4.43 Ligand excluded by PLIP SO4.40: 3 residues within 4Å: Chain E: R.50, W.61, Q.64 Ligand excluded by PLIP SO4.41: 6 residues within 4Å: Chain C: H.106, R.113 Chain E: H.114, S.115, P.119 Ligands: SO4.39 Ligand excluded by PLIP SO4.42: 5 residues within 4Å: Chain E: R.15, R.18 Chain L: D.60, H.63, D.67 Ligand excluded by PLIP SO4.43: 6 residues within 4Å: Chain C: R.113 Chain E: R.87, P.119 Chain I: E.109, F.111 Ligands: SO4.39 Ligand excluded by PLIP SO4.44: 2 residues within 4Å: Chain E: V.48, R.50 Ligand excluded by PLIP SO4.47: 7 residues within 4Å: Chain D: S.54, A.56 Chain F: S.54 Chain H: S.54, A.56 Ligands: SO4.29, SO4.65 Ligand excluded by PLIP SO4.48: 5 residues within 4Å: Chain F: H.114, S.115, Y.116 Ligands: SO4.50, SO4.52 Ligand excluded by PLIP SO4.49: 3 residues within 4Å: Chain F: R.50, W.61, Q.64 Ligand excluded by PLIP SO4.50: 6 residues within 4Å: Chain B: H.106, R.113 Chain F: H.114, S.115, P.119 Ligands: SO4.48 Ligand excluded by PLIP SO4.51: 5 residues within 4Å: Chain F: R.15, R.18 Chain H: D.60, H.63, D.67 Ligand excluded by PLIP SO4.52: 6 residues within 4Å: Chain B: R.113 Chain D: E.109, F.111 Chain F: R.87, P.119 Ligands: SO4.48 Ligand excluded by PLIP SO4.53: 2 residues within 4Å: Chain F: V.48, R.50 Ligand excluded by PLIP SO4.56: 7 residues within 4Å: Chain B: S.54, A.56 Chain C: S.54, A.56 Chain G: S.54 Ligands: SO4.11, SO4.20 Ligand excluded by PLIP SO4.57: 5 residues within 4Å: Chain G: H.114, S.115, Y.116 Ligands: SO4.59, SO4.61 Ligand excluded by PLIP SO4.58: 3 residues within 4Å: Chain G: R.50, W.61, Q.64 Ligand excluded by PLIP SO4.59: 6 residues within 4Å: Chain A: H.106, R.113 Chain G: H.114, S.115, P.119 Ligands: SO4.57 Ligand excluded by PLIP SO4.60: 5 residues within 4Å: Chain C: D.60, H.63, D.67 Chain G: R.15, R.18 Ligand excluded by PLIP SO4.61: 6 residues within 4Å: Chain A: R.113 Chain B: E.109, F.111 Chain G: R.87, P.119 Ligands: SO4.57 Ligand excluded by PLIP SO4.62: 2 residues within 4Å: Chain G: V.48, R.50 Ligand excluded by PLIP SO4.65: 7 residues within 4Å: Chain D: S.54, A.56 Chain F: S.54, A.56 Chain H: S.54 Ligands: SO4.29, SO4.47 Ligand excluded by PLIP SO4.66: 5 residues within 4Å: Chain H: H.114, S.115, Y.116 Ligands: SO4.68, SO4.70 Ligand excluded by PLIP SO4.67: 3 residues within 4Å: Chain H: R.50, W.61, Q.64 Ligand excluded by PLIP SO4.68: 6 residues within 4Å: Chain H: H.114, S.115, P.119 Chain I: H.106, R.113 Ligands: SO4.66 Ligand excluded by PLIP SO4.69: 5 residues within 4Å: Chain D: D.60, H.63, D.67 Chain H: R.15, R.18 Ligand excluded by PLIP SO4.70: 6 residues within 4Å: Chain F: E.109, F.111 Chain H: R.87, P.119 Chain I: R.113 Ligands: SO4.66 Ligand excluded by PLIP SO4.71: 2 residues within 4Å: Chain H: V.48, R.50 Ligand excluded by PLIP SO4.74: 7 residues within 4Å: Chain E: S.54, A.56 Chain I: S.54 Chain L: S.54, A.56 Ligands: SO4.38, SO4.101 Ligand excluded by PLIP SO4.75: 5 residues within 4Å: Chain I: H.114, S.115, Y.116 Ligands: SO4.77, SO4.79 Ligand excluded by PLIP SO4.76: 3 residues within 4Å: Chain I: R.50, W.61, Q.64 Ligand excluded by PLIP SO4.77: 6 residues within 4Å: Chain H: H.106, R.113 Chain I: H.114, S.115, P.119 Ligands: SO4.75 Ligand excluded by PLIP SO4.78: 5 residues within 4Å: Chain E: D.60, H.63, D.67 Chain I: R.15, R.18 Ligand excluded by PLIP SO4.79: 6 residues within 4Å: Chain H: R.113 Chain I: R.87, P.119 Chain L: E.109, F.111 Ligands: SO4.75 Ligand excluded by PLIP SO4.80: 2 residues within 4Å: Chain I: V.48, R.50 Ligand excluded by PLIP SO4.83: 7 residues within 4Å: Chain A: S.54, A.56 Chain J: S.54 Chain K: S.54, A.56 Ligands: SO4.2, SO4.92 Ligand excluded by PLIP SO4.84: 5 residues within 4Å: Chain J: H.114, S.115, Y.116 Ligands: SO4.86, SO4.88 Ligand excluded by PLIP SO4.85: 3 residues within 4Å: Chain J: R.50, W.61, Q.64 Ligand excluded by PLIP SO4.86: 6 residues within 4Å: Chain D: H.106, R.113 Chain J: H.114, S.115, P.119 Ligands: SO4.84 Ligand excluded by PLIP SO4.87: 5 residues within 4Å: Chain J: R.15, R.18 Chain K: D.60, H.63, D.67 Ligand excluded by PLIP SO4.88: 6 residues within 4Å: Chain A: E.109, F.111 Chain D: R.113 Chain J: R.87, P.119 Ligands: SO4.84 Ligand excluded by PLIP SO4.89: 2 residues within 4Å: Chain J: V.48, R.50 Ligand excluded by PLIP SO4.92: 7 residues within 4Å: Chain A: S.54, A.56 Chain J: S.54, A.56 Chain K: S.54 Ligands: SO4.2, SO4.83 Ligand excluded by PLIP SO4.93: 5 residues within 4Å: Chain K: H.114, S.115, Y.116 Ligands: SO4.95, SO4.97 Ligand excluded by PLIP SO4.94: 3 residues within 4Å: Chain K: R.50, W.61, Q.64 Ligand excluded by PLIP SO4.95: 6 residues within 4Å: Chain K: H.114, S.115, P.119 Chain L: H.106, R.113 Ligands: SO4.93 Ligand excluded by PLIP SO4.96: 5 residues within 4Å: Chain A: D.60, H.63, D.67 Chain K: R.15, R.18 Ligand excluded by PLIP SO4.97: 6 residues within 4Å: Chain J: E.109, F.111 Chain K: R.87, P.119 Chain L: R.113 Ligands: SO4.93 Ligand excluded by PLIP SO4.98: 2 residues within 4Å: Chain K: V.48, R.50 Ligand excluded by PLIP SO4.101: 7 residues within 4Å: Chain E: S.54, A.56 Chain I: S.54, A.56 Chain L: S.54 Ligands: SO4.38, SO4.74 Ligand excluded by PLIP SO4.102: 5 residues within 4Å: Chain L: H.114, S.115, Y.116 Ligands: SO4.104, SO4.106 Ligand excluded by PLIP SO4.103: 3 residues within 4Å: Chain L: R.50, W.61, Q.64 Ligand excluded by PLIP SO4.104: 6 residues within 4Å: Chain K: H.106, R.113 Chain L: H.114, S.115, P.119 Ligands: SO4.102 Ligand excluded by PLIP SO4.105: 5 residues within 4Å: Chain I: D.60, H.63, D.67 Chain L: R.15, R.18 Ligand excluded by PLIP SO4.106: 6 residues within 4Å: Chain E: E.109, F.111 Chain K: R.113 Chain L: R.87, P.119 Ligands: SO4.102 Ligand excluded by PLIP SO4.107: 2 residues within 4Å: Chain L: V.48, R.50 Ligand excluded by PLIP

12 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.9: 6 residues within 4Å: Chain A: H.143 Chain G: Y.24, L.128, G.129, I.130, Q.131 6 PLIP interactions: 4 interactions with chain G, 2 interactions with chain A Hydrogen bonds: G:Y.24, G:L.128, G:I.130, G:Q.131 Water bridges: A:Y.139, A:Y.139 TRS.18: 6 residues within 4Å: Chain B: H.143 Chain F: Y.24, L.128, G.129, I.130, Q.131 6 PLIP interactions: 5 interactions with chain F, 1 interactions with chain B Hydrogen bonds: F:Y.24, F:L.128, F:I.130, F:Q.131 Water bridges: F:L.128, B:Y.139 TRS.27: 6 residues within 4Å: Chain C: H.143 Chain E: Y.24, L.128, G.129, I.130, Q.131 6 PLIP interactions: 5 interactions with chain E, 1 interactions with chain C Hydrogen bonds: E:Y.24, E:L.128, E:I.130, E:Q.131 Water bridges: E:L.128, C:Y.139 TRS.36: 6 residues within 4Å: Chain D: H.143 Chain J: Y.24, L.128, G.129, I.130, Q.131 6 PLIP interactions: 4 interactions with chain J, 2 interactions with chain D Hydrogen bonds: J:Y.24, J:L.128, J:I.130, J:Q.131 Water bridges: D:Y.139, D:Y.139 TRS.45: 6 residues within 4Å: Chain C: Y.24, L.128, G.129, I.130, Q.131 Chain E: H.143 6 PLIP interactions: 4 interactions with chain C, 2 interactions with chain E Hydrogen bonds: C:Y.24, C:L.128, C:I.130, C:Q.131 Water bridges: E:Y.139, E:Y.139 TRS.54: 6 residues within 4Å: Chain B: Y.24, L.128, G.129, I.130, Q.131 Chain F: H.143 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain F Hydrogen bonds: B:Y.24, B:L.128, B:I.130, B:Q.131 Water bridges: F:Y.139, F:Y.139 TRS.63: 6 residues within 4Å: Chain A: Y.24, L.128, G.129, I.130, Q.131 Chain G: H.143 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain G Hydrogen bonds: A:Y.24, A:L.128, A:I.130, A:Q.131 Water bridges: G:Y.139, G:Y.139 TRS.72: 6 residues within 4Å: Chain H: H.143 Chain I: Y.24, L.128, G.129, I.130, Q.131 6 PLIP interactions: 5 interactions with chain I, 1 interactions with chain H Hydrogen bonds: I:Y.24, I:L.128, I:I.130, I:Q.131 Water bridges: I:L.128, H:Y.139 TRS.81: 6 residues within 4Å: Chain H: Y.24, L.128, G.129, I.130, Q.131 Chain I: H.143 6 PLIP interactions: 5 interactions with chain H, 1 interactions with chain I Hydrogen bonds: H:Y.24, H:L.128, H:I.130, H:Q.131 Water bridges: H:L.128, I:Y.139 TRS.90: 6 residues within 4Å: Chain D: Y.24, L.128, G.129, I.130, Q.131 Chain J: H.143 6 PLIP interactions: 5 interactions with chain D, 1 interactions with chain J Hydrogen bonds: D:Y.24, D:L.128, D:I.130, D:Q.131 Water bridges: D:L.128, J:Y.139 TRS.99: 6 residues within 4Å: Chain K: H.143 Chain L: Y.24, L.128, G.129, I.130, Q.131 6 PLIP interactions: 1 interactions with chain K, 5 interactions with chain L Water bridges: K:Y.139, L:L.128 Hydrogen bonds: L:Y.24, L:L.128, L:I.130, L:Q.131 TRS.108: 6 residues within 4Å: Chain K: Y.24, L.128, G.129, I.130, Q.131 Chain L: H.143 6 PLIP interactions: 4 interactions with chain K, 2 interactions with chain L Hydrogen bonds: K:Y.24, K:L.128, K:I.130, K:Q.131 Water bridges: L:Y.139, L:Y.139

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Peon, A. et al., Understanding the Key Factors that Control the Inhibition of Type II Dehydroquinase by (2R)-2- Benzyl-3-Dehydroquinic Acids. Chemmedchem (2010)

Release Date

2010-09-15

Peptides

3-DEHYDROQUINATE DEHYDRATASE: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

I
A

J
A

K
A

L
A

3-DEHYDROQUINATE DEHYDRATASE

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